PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1501_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 445aa MW: 48476.8 Da PI: 6.954

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1501_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.3e-05	327	365	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Neem_1501_f_1 327 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 365 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.706	315	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.15E-5	325	369	No hit	No description
SuperFamily	SSF47459	1.7E-10	325	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-8	329	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MESANIHHEH QLRDQLVGSS SSLPTPSACH GVASSTHTWT PTPNVTLNAT GNFNPSYNGV 60 ILNSRQKNEI LFPPVNSAMI QEPGIHWNSN AAESLTSQTA HDIHLAKIKE EFADSFPKYT 120 EMLNSPSSIE DSHLTTTRSS KNEQKDLNDL SEKLLLKTIS SGFPINGYQF SAGDFYSNPH 180 NNISSFGSAM PSRRNFSQIY PSINISNLNQ SASATSSSFD MNLQALDLLA SARFSGNFSQ 240 SSHDNLGMFE ESLPFGFEIQ QSSRRPSCSP SNKISSSSSS PFNNSETTAE AKRPSGNLRQ 300 PTATQSQSAA KKSRSESRAS CPPFKVRKEK LGDRIAALQQ LVAPFGKTDT ASVLMEAIGY 360 IKFLQNQVEL IDFWMQTLSV PYMKSAHNKS SRTIQGGSME ETDEEPKQDL RSRGLCLVPL 420 SCMTYVTNDA GAGGIWPPPA FGGGT

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MESANIHHEH QLRDQLVGSS SSLPTPSACH GVASSTHTWT PTPNVTLNAT GNFNPSYNGV  60
ILNSRQKNEI LFPPVNSAMI QEPGIHWNSN AAESLTSQTA HDIHLAKIKE EFADSFPKYT  120
EMLNSPSSIE DSHLTTTRSS KNEQKDLNDL SEKLLLKTIS SGFPINGYQF SAGDFYSNPH  180
NNISSFGSAM PSRRNFSQIY PSINISNLNQ SASATSSSFD MNLQALDLLA SARFSGNFSQ  240
SSHDNLGMFE ESLPFGFEIQ QSSRRPSCSP SNKISSSSSS PFNNSETTAE AKRPSGNLRQ  300
PTATQSQSAA KKSRSESRAS CPPFKVRKEK LGDRIAALQQ LVAPFGKTDT ASVLMEAIGY  360
IKFLQNQVEL IDFWMQTLSV PYMKSAHNKS SRTIQGGSME ETDEEPKQDL RSRGLCLVPL  420
SCMTYVTNDA GAGGIWPPPA FGGGT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006473548.1	0.0	transcription factor bHLH110
TrEMBL	A0A438K1J3	1e-178	A0A438K1J3_VITVI; Transcription factor bHLH110
STRING	XP_006473548.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9351	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-70	bHLH family protein