PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_15288_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 254aa    MW: 27408.5 Da    PI: 5.3097
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_15288_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-101444131
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartm 31
                     +g+WT+eEd +lv +++++G+g+W++++   
   Neem_15288_f_1 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNT 44
                     79************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-12543IPR009057Homeodomain-like
SuperFamilySSF466893.37E-9845IPR009057Homeodomain-like
PROSITE profilePS5129412.392961IPR017930Myb domain
SMARTSM007173.9E-41367IPR001005SANT/Myb domain
PfamPF002495.5E-91445IPR001005SANT/Myb domain
CDDcd001674.20E-61640No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGVDGVS TANSQQVSNS  60
KGQWERRLQT NIHMAKQALR EALSLDKTST VSLPLPTDQS TACPNSSSTT ITYASSAENI  120
SRLLQNWMKI PPKSTTTTAR TNSQASEGTI SATTALLQNW MKIPPKSTTT TARTNSQASE  180
GTISATTATA TTPEDLETSL FQDESKPMTN THQQVPLSLL EKWLFDDAAA AAATQTHEED  240
LINMSLVDTA AALF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296191e-34KP229619.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB63) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006477451.14e-49myb-related protein 306-like
TrEMBLA0A2Z6NMM71e-62A0A2Z6NMM7_TRISU; Uncharacterized protein
STRINGXP_006477451.11e-48(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.16e-33myb domain protein 60