PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1555_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 549aa    MW: 60181.8 Da    PI: 5.6828
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1555_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS315.21.5e-961785271357
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l+++L++cA+ v+s + e+a + L+ l+e++s++g+p++R+a +f eAL +r ++   ++y   +p e++    ++ + +++++++++P+ kf++l
  Neem_1555_f_3 178 LRRALIDCARLVES-QPERAVKSLNSLKETVSQTGNPTERVAYHFIEALLNRATSGAGKIY---TPLEAN---CEDCILSYRALNDACPYSKFAYL 266
                    6799********98.77899999*******************************9444444...566665...899******************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                    taNqaIlea+e+++ +Hi+Df+i qG+QW  LlqaLa+R+ g+p ++Ri g+ +++ g  s+ +l +tg+rL++fA++l +++ef++ + + +++l
  Neem_1555_f_3 267 TANQAILEATEKASFIHIVDFGIVQGIQWSFLLQALANRRTGKPvRVRISGIPPQALGkcSSVSLLATGKRLREFARSLSINLEFEP-ILTPIKKL 361
                    *************************************99977666*********8877999**************************.799***** PP

           GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                    +  ++r+ p+Ea++Vn++lql++lld++  + +   +vL++ +sl+P+vv++ e e+++n+  F++rf +a++yy+a+f+slea++ ++s++r  v
  Neem_1555_f_3 362 TATSFRMGPDEAVVVNFMLQLYNLLDDNPVSLQ---AVLEVARSLKPTVVTLGEYETSLNRVGFVTRFKNAFKYYTAVFESLEANM-TDSSARLYV 453
                    *************************77655555...8************************************************6.999****** PP

           GRAS 286 Erellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                    Er++lgr+i+ ++  e++  +rer e++e+W + +e++GF+pvp+s++a +qa+ ll +++ s  y++ +++  
  Neem_1555_f_3 454 ERHILGRRISGLLGPEKSGsKRERAESKESWLAFMENSGFTPVPFSHYAISQAEILLWHYNySPLYSLSQSNPK 527
                    **************99987689***************************************9999999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.701152523IPR005202Transcription factor GRAS
PfamPF035145.0E-94178527IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MSNSPNFGYG FPGPGFSDPL DTGESGFQFP QIEQHSSGFR FSDFGTGAGG EFDSDDWMES  60
LMNSGHSTDS SNLPTGCDGW QNNADFGLYA TDPFTSCQNQ LNVSCSPPSD LSRIVFTDTQ  120
KCVIPAWPPS PAPPLPPAEP TVKEATPASP VQPSVPQRDA VGASASTSSP EADSAQPLRR  180
ALIDCARLVE SQPERAVKSL NSLKETVSQT GNPTERVAYH FIEALLNRAT SGAGKIYTPL  240
EANCEDCILS YRALNDACPY SKFAYLTANQ AILEATEKAS FIHIVDFGIV QGIQWSFLLQ  300
ALANRRTGKP VRVRISGIPP QALGKCSSVS LLATGKRLRE FARSLSINLE FEPILTPIKK  360
LTATSFRMGP DEAVVVNFML QLYNLLDDNP VSLQAVLEVA RSLKPTVVTL GEYETSLNRV  420
GFVTRFKNAF KYYTAVFESL EANMTDSSAR LYVERHILGR RISGLLGPEK SGSKRERAES  480
KESWLAFMEN SGFTPVPFSH YAISQAEILL WHYNYSPLYS LSQSNPKFFN SVMEPGAYSH  540
HFFLALMGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1151775343364GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425686.10.0SCARECROW-LIKE protein 7
RefseqXP_006466785.10.0SCARECROW-LIKE protein 7
RefseqXP_006466786.10.0SCARECROW-LIKE protein 7
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLV4SPA10.0V4SPA1_9ROSI; Uncharacterized protein
STRINGXP_006466785.10.0(Citrus sinensis)
STRINGXP_006425686.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-168GRAS family protein