PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_15734_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 313aa    MW: 35279.4 Da    PI: 6.8676
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_15734_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.5e-10203250455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++Y++sLq
  Neem_15734_f_1 203 SHSLAERVRREKISERMKTLQKLVPGC----DKVTGKALMLDEIINYVQSLQ 250
                     8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-17197268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-10197254No hitNo description
PROSITE profilePS5088815.967199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-17199268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-7203250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-11205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAAFSYQHQY HPFLLDSVFL SSNDTNMVVE EGNFMNTNLF SQFSSPKLPL AQEINSNCHI  60
SFNPLEYGGG FANGCVDHSS SKIAAVSDNE LSSVTKNQSI LSSTVVDNCN KIAESGEQVT  120
QSTVTQMDKK RKNRNNSSSS NSAESKDLRE VKSKRQKKCN DGEKAEEEKN NPKAEKKNQK  180
KVPEEPPKDY IHVRARRGQA TDSHSLAERV RREKISERMK TLQKLVPGCD KVTGKALMLD  240
EIINYVQSLQ NQVEFLSMKL ASVNPMFYEF GMDLDAFVDR PDQDNGSLLW DVEEQKQKFL  300
NPSGFTNNLC SFH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634687.11e-117transcription factor bHLH137-like
TrEMBLA0A2C9UIY91e-115A0A2C9UIY9_MANES; Uncharacterized protein
STRINGcassava4.1_023959m1e-116(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.26e-55bHLH family protein