PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_15749_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GeBP

Protein Properties

Length: 387aa MW: 43190.2 Da PI: 5.0292

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_15749_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	129.4	1.5e-40	157	254	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskki 95 lfqrlwseeDeiv+L+G+i++ +k+g +p +d++afy+++kks++++vs+ qlv+KirrLK+K++++ +k k+g++++fsk+h+qk+++lskk+ Neem_15749_f_1 157 LFQRLWSEEDEIVVLKGMIEYSTKKGIDPNQDMNAFYDYIKKSLHVDVSRAQLVDKIRRLKRKYENNLEKgLKKGEDQTFSKPHEQKAYDLSKKL 251 79******************************************************************99********************* PP DUF573 96 Wgs 98 Wg+ Neem_15749_f_1 252 WGT 254 *95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.5E-35	158	253	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MAPKKANPIE EPPAASLSEG EEEETSSEEE TSSEDEAEED TQEPSQPSSP PRQQTQKQTA 60 VKKPEITTVT SQSKSSSSEV SGSESESESE PDATPKPIAS KPMEETPKAT KSRSKPAAKR 120 PNETEETPKD SKRLKKKGGD ADLDEEKKPG EDTKKQLFQR LWSEEDEIVV LKGMIEYSTK 180 KGIDPNQDMN AFYDYIKKSL HVDVSRAQLV DKIRRLKRKY ENNLEKGLKK GEDQTFSKPH 240 EQKAYDLSKK LWGTESISGV IESAAKSNGK VRKNQNQKGN IKSLAFLKAE LIDGAKDVEK 300 MDVDNKEGDG VDKSVNMKEF HKNFGMAGLE EFVINDGLDM IGAVKKAELE EKWKKLQIAQ 360 LELFLQRNEL INDQAKLTLD ALKSSGN

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MAPKKANPIE EPPAASLSEG EEEETSSEEE TSSEDEAEED TQEPSQPSSP PRQQTQKQTA  60
VKKPEITTVT SQSKSSSSEV SGSESESESE PDATPKPIAS KPMEETPKAT KSRSKPAAKR  120
PNETEETPKD SKRLKKKGGD ADLDEEKKPG EDTKKQLFQR LWSEEDEIVV LKGMIEYSTK  180
KGIDPNQDMN AFYDYIKKSL HVDVSRAQLV DKIRRLKRKY ENNLEKGLKK GEDQTFSKPH  240
EQKAYDLSKK LWGTESISGV IESAAKSNGK VRKNQNQKGN IKSLAFLKAE LIDGAKDVEK  300
MDVDNKEGDG VDKSVNMKEF HKNFGMAGLE EFVINDGLDM IGAVKKAELE EKWKKLQIAQ  360
LELFLQRNEL INDQAKLTLD ALKSSGN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006449140.1	0.0	probable transcription factor At1g11510
TrEMBL	V4UDY2	1e-179	V4UDY2_9ROSI; Uncharacterized protein
STRING	XP_006449140.1	1e-180	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	4e-33	DNA-binding storekeeper protein-related transcriptional regulator