PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_15768_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family FAR1
Protein Properties Length: 1454aa    MW: 163116 Da    PI: 6.3703
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_15768_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR133.61.3e-1010871173890
            FAR1    8 kevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr....traetrtgCkaklkvkkek.dgkwevtkleleHnHela 90  
                      ++ GF +++++s +  ++g+  + t++C +eg+++++ k++e++++    +++++++gC  +lk +k   d++w ++ +   HnH+++
  Neem_15768_f_1 1087 RKNGFVIVIKRSDSG-DSGQKARITLCCEREGQNRSTGKNKEDKKEkwlrNTSTKKCGCPFTLKGRKLGsDDNWILEVVCGVHNHPIT 1173
                      788*******98876.88889**************99999444433344488888999999998877777***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.40.106.8E-6397485IPR013783Immunoglobulin-like fold
SuperFamilySSF812968.87E-17398484IPR014756Immunoglobulin E-set
PfamPF018332.5E-6398483IPR002909IPT domain
CDDcd002041.62E-12581690No hitNo description
Gene3DG3DSA:1.25.40.201.7E-16582694IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.51E-17587692IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.422598692IPR020683Ankyrin repeat-containing domain
PfamPF127966.6E-7603693IPR020683Ankyrin repeat-containing domain
SMARTSM002480.017631660IPR002110Ankyrin repeat
PROSITE profilePS500889.404631663IPR002110Ankyrin repeat
SMARTSM00248460670699IPR002110Ankyrin repeat
SuperFamilySSF525401.96E-7802854IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001512803825IPR000048IQ motif, EF-hand binding site
PfamPF006120.054805824IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.163805833IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0044826848IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.468827851IPR000048IQ motif, EF-hand binding site
PfamPF006121.5E-4831848IPR000048IQ motif, EF-hand binding site
PfamPF031012.1E-810871173IPR004330FAR1 DNA binding domain
PfamPF105512.6E-2412881382IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1454 aa     Download sequence    Send to blast
MGNRTNFNRI KATEGTTPYI QETEETIPNS EVEGSQSSSF HPNSYQMRSQ TTDTTSLNTA  60
QALEFEDVES VYNNQASSSF CSFLDSKQPV TENIDAGLSD PYYPTLFTNA VPVLCWLSNC  120
LTDNYQGKYS AITGADFISP AQADKIRVAN DAGLTYEHQK NLDFLPWEDV SRNCARGIGS  180
QPFPTFSSTQ PENLGNLAKQ GHEILGELFT NSFGERKEFG SHVEIQGEWQ TSKDDSSHLP  240
NWPTDQKLYS DLAHDPTSRS REQEVACDDL LNSLQPPNAH RNMQKNLHAQ LSNAECGHLQ  300
KSDSESNLTV EGKSIYSSDI KPHLFDGSTE EGLKKIDSFN RWIRKEIGDV ESNMQSSSGA  360
YWETVESENG HDSGIPAQEH LDSYMLSPSI SQDQLYSIID FSPNWAYVGS EVKVLITGRF  420
LLSQQEAEKC KWSCMFGKVE VPAEIVAGGV LRCHTPSQKV GRVPFYVTCS NRLACSEVQE  480
FEYRANHVQD VDTSNNYGDD TGVSLRMRLG KLLCLSSVNT SNGDPSNQTD IFQLKSKISS  540
LLKEENDGWD QMLKFTENFS LGDVQEKLLQ KHMKEKLQVW LLQKAAEGGK GPSLLDEDGQ  600
GVLHFAAALG YDWALEPTVV AGVNINFRDV NGWTALHWAA YCGRERTIAS LISLGAAPGA  660
LSDPTPTYPL GQTPADLAAS VGHKGIAGYL AESALSSHLS AIILNKHDSD AAEINGAKVV  720
QTVSQRPPTP ISHGDLPHKL SLKNSLAAIC NARQAAARIQ QVFRLQTFQK KQLKEYGDET  780
FGISDECALS LLAVKSHKAG HHDVHAAAIR IQNKFRSWKG RKDFLLIRQQ IIKIQAHVRG  840
HQVRKNYKTI VWSVGILENV ILRWRRKGSG LSGFKSEALT EGGSSMLDTS SNEDDFDFLK  900
EGRKQKEERL QKALARVKSM VQYPEARNQY CRLLNVVNEI QETKALVLNN SEETVDFDED  960
LMDIAAQPDN DIFMPLKDHN SQLKEDFMEE CAQGVGSQPF HPPSSSTQPD TCKKGQEILG  1020
QLSTNSSSIR EEFGSHLRIQ GESKSMTSIQ STDVGSESVM DYTNEFTNYE IFKSKQALIQ  1080
WTREVGRKNG FVIVIKRSDS GDSGQKARIT LCCEREGQNR STGKNKEDKK EKWLRNTSTK  1140
KCGCPFTLKG RKLGSDDNWI LEVVCGVHNH PITKPLEGRS YAGSLSKEET SLVIDMSKSM  1200
IPPKDILMTL KNRDANNAST IKQIYNARQR YNKVIGMIER SQMQQLLNKL FERNYIEGHR  1260
SFDNPDVIKD IFWAHPASVD LLHAFPYILL MDCTYKANRY NLPLLEIIGV TSTNMTFAIA  1320
FAYLEYGLED NYVWALEKLR NIMDDNALPT IILSDKEMAL MKAIQRVFPS TKHLLGRWHI  1380
SRSVSINCKK LFAINQIWER FMVSWNAVVL SSNQDEFSNR LNNLKQEFSG YPQAVEYHWK  1440
ITFKVEEGTS SQSR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428204.10.0calmodulin-binding transcription activator 3
TrEMBLA0A067EZ920.0A0A067EZ92_CITSI; Uncharacterized protein
STRINGXP_006428204.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86012535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1