PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_15799_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 235aa    MW: 25850.9 Da    PI: 9.2856
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_15799_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-19142188252
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                      y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+ +
  Neem_15799_f_1 142 NYRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFSTAEEAARAYDKAAIE 188
                     59*******.**********82....48*********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.00E-28141189No hitNo description
PfamPF008471.7E-13142188IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-18142189IPR016177DNA-binding domain
PROSITE profilePS5103222.366142202IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-27142189IPR001471AP2/ERF domain
SMARTSM003809.0E-26142200IPR001471AP2/ERF domain
PRINTSPR003672.2E-12143154IPR001471AP2/ERF domain
PRINTSPR003672.2E-12165181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MQRSSKRPRL AKSAAQPPPL TPPRLTREQE LSVMVAALRN VIVGNTNNIP LDFSPEFFHL  60
QGWITTASAT ATTPMPNSGS YNNDGNFGNS TLPPPSSLDT CQVCKIQGCL GCNFFRPSQQ  120
QEQKKTATTT TAGTGKKRGK KNYRGVRQRP WGKWAAEIRD PRRATRVWLG TFSTAEEAAR  180
AYDKAAIEFQ LGDGFGRESD FWEMIGEDDI QQWMTMMDFG GDSSDSATTG TGLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17133187760Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021625546.15e-74ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ069e-30EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A2C9V3H01e-72A0A2C9V3H0_MANES; Uncharacterized protein
STRINGcassava4.1_014137m2e-73(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54692449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.15e-26redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]