PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1584_f_6
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 327aa    MW: 36630.8 Da    PI: 9.9169
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1584_f_6genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07267310243
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      g W++ Ed  l++a k ++++   +W++Ia+ ++ gR+   c  r
    Neem_1584_f_6 267 GGWSAGEDIALLNALKAFPKDapmRWEKIAAAVP-GRSKAACMKR 310
                      56********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.273161202IPR017877Myb-like domain
SMARTSM007171.8E-4165218IPR001005SANT/Myb domain
SuperFamilySSF466893.9E-6167206IPR009057Homeodomain-like
CDDcd001670.00565168215No hitNo description
SuperFamilySSF466893.35E-10265313IPR009057Homeodomain-like
SMARTSM007172.5E-5265317IPR001005SANT/Myb domain
PfamPF002491.2E-6267310IPR001005SANT/Myb domain
PROSITE profilePS500906.969267310IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.6E-6267310IPR009057Homeodomain-like
CDDcd001678.96E-6269310No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEFLDEDTRP RFLFQSRPQP ASLENNEDSD HQKPTKLFLF IFISISCFLI ILSFFFLQSE  60
PLKSILLWLS LSLMVGPFAP SHLTGGHTRV GYGRVIENPV QDQKIEPEVK KKPQKNRSLV  120
HKAQDFHVSS VPSGENSNGS SGSAAKEKKV EALEQKGNRG GKNVEEKEWS EEDIEILKKQ  180
MVKNPVGKPK RWEVIAEAFN GRHRVESVIK KAKELGEKKV DDSDSYGQFL KNRKALDIRI  240
QNKNEGLVME NGEESRKESK ENVGVGGGWS AGEDIALLNA LKAFPKDAPM RWEKIAAAVP  300
GRSKAACMKR VADLKRDFRS SKAGAES
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028772848.11e-127transcription factor MAMYB
SwissprotQ9ASQ27e-83MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A2H5PCB11e-123A0A2H5PCB1_CITUN; Uncharacterized protein
TrEMBLB9SS021e-123B9SS02_RICCO; DNA binding protein, putative
TrEMBLV4VCG31e-123V4VCG3_9ROSI; Uncharacterized protein
STRINGXP_006485375.11e-124(Citrus sinensis)
STRINGXP_002528771.11e-124(Ricinus communis)
STRINGXP_006436809.11e-124(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126921011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.14e-74MYB_related family protein