PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_15962_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

HRT-like

Protein Properties

Length: 365aa MW: 40722.8 Da PI: 9.1633

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_15962_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	49.6	6.8e-16	143	169	1	27
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHK 27 iCG+ l+dGs C+r+Pv+g+KRCeeH Neem_15962_f_1 143 ICGIVLDDGSLCRRPPVQGNKRCEEHR 169 8*************************6 PP
2	HRT-like	59.1	7.1e-19	229	259	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l dG++C+rqP+kgR RCeeHKGm+i Neem_15962_f_1 229 ICGVDLVDGTFCTRQPAKGRVRCEEHKGMKI 259 8****************************97 PP
3	HRT-like	27.3	6.3e-09	293	317	1	26
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeH 26 +CG+ + +Gs C+r Pvkg+ RC++H Neem_15962_f_1 293 VCGAQTLNGSYCRR-PVKGNTRCWQH 317 7*********86.9******** PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MKNKEAALEA ESELLGKYDY PWNKGGNGRR RHDDILPKLN KDSSNYIQFS KTIRKLLYIS 60 QKPAGITIKA SKLPLEGNKF STYADEESHN FFSEIHKFTK SRPRLVLDDS SANEDFTGIC 120 GSNPVKLPVV AEKCPIGEGF SSICGIVLDD GSLCRRPPVQ GNKRCEEHRW RKINGSNSKT 180 TGTLQYLPDA VCDSNPRSGS NFSEIYGPKK VQPQVSSDRS ATKLHYDTIC GVDLVDGTFC 240 TRQPAKGRVR CEEHKGMKIK GIKSKSATQD KSHVYDAGSN LGTFDDRYYC SSVCGAQTLN 300 GSYCRRPVKG NTRCWQHSKQ VFDMRSPIMS CNDWYYGESS VCGAPTRSGS YCRRTVNGGG 360 RCWQH

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MKNKEAALEA ESELLGKYDY PWNKGGNGRR RHDDILPKLN KDSSNYIQFS KTIRKLLYIS  60
QKPAGITIKA SKLPLEGNKF STYADEESHN FFSEIHKFTK SRPRLVLDDS SANEDFTGIC  120
GSNPVKLPVV AEKCPIGEGF SSICGIVLDD GSLCRRPPVQ GNKRCEEHRW RKINGSNSKT  180
TGTLQYLPDA VCDSNPRSGS NFSEIYGPKK VQPQVSSDRS ATKLHYDTIC GVDLVDGTFC  240
TRQPAKGRVR CEEHKGMKIK GIKSKSATQD KSHVYDAGSN LGTFDDRYYC SSVCGAQTLN  300
GSYCRRPVKG NTRCWQHSKQ VFDMRSPIMS CNDWYYGESS VCGAPTRSGS YCRRTVNGGG  360
RCWQH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006475546.1	1e-142	protein EFFECTOR OF TRANSCRIPTION 2-like
Refseq	XP_024033802.1	1e-142	protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A067EVV1	1e-143	A0A067EVV1_CITSI; Uncharacterized protein
TrEMBL	A0A2H5PDN3	1e-141	A0A2H5PDN3_CITUN; Uncharacterized protein
TrEMBL	A0A2H5PEE1	1e-141	A0A2H5PEE1_CITUN; Uncharacterized protein (Fragment)
STRING	XP_006475546.1	1e-142	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	5e-32	effector of transcription2