PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1618_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 241aa MW: 26602.1 Da PI: 5.0514

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1618_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.5	1.6e-05	36	85	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r + erE+ R+++N+ f L e l a ++ + Ka++L +A++ +k+L Neem_1618_f_1 36 KRIHKAEREKLKREHLNDLFLDLAEALELA----QPNNGKATVLNEATRLLKDL 85 688899*********************9....67899********99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.95E-5	33	90	No hit	No description
PROSITE profile	PS50888	10.671	35	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.2E-7	35	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-10	36	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MGSEPLAPLV DKVNVTVDAS VDGPCPTKKN QNRVPKRIHK AEREKLKREH LNDLFLDLAE 60 ALELAQPNNG KATVLNEATR LLKDLVSQIE SLKKENASLL SESHYVTIEK NELKEENSAL 120 ESQIEILQSE LEARVARSKP DLNVPPPEFQ QPELTSEYPG DSYKLPAVEP TMPQAPTTVL 180 VVPICPDLQA FSAPDAAQLT SIPASNVSKP HARYPNPADS WPSQLLGERI SRTRDQGPRN 240 V

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024954489.1	1e-130	transcription factor bHLH47 isoform X1
Swissprot	Q9SN74	2e-63	BH047_ARATH; Transcription factor bHLH47
TrEMBL	A0A067GBU2	1e-129	A0A067GBU2_CITSI; Uncharacterized protein
TrEMBL	A0A2H5NFV0	1e-129	A0A2H5NFV0_CITUN; Uncharacterized protein
TrEMBL	A0A2H5NHB9	1e-129	A0A2H5NHB9_CITUN; Uncharacterized protein (Fragment)
TrEMBL	V4TMF6	1e-129	V4TMF6_9ROSI; Uncharacterized protein
STRING	XP_006476617.1	1e-130	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11720	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	9e-56	bHLH family protein

Publications ? help Back to Top
Rodríguez-Celma J, et al. The transcriptional response of Arabidopsis leaves to Fe deficiency. Front Plant Sci, 2013. 4: p. 276 [PMID:23888164] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Martínez-Trujillo M, et al. Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana. Plant Mol. Biol., 2014. 86(1-2): p. 35-50 [PMID:24928490] Li H,Wang L,Yang ZM Co-expression analysis reveals a group of genes potentially involved in regulation of plant response to iron-deficiency. Gene, 2015. 554(1): p. 16-24 [PMID:25300251] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]