PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1623_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

HD-ZIP

Protein Properties

Length: 238aa MW: 27699 Da PI: 4.6642

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1623_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	7.8e-19	29	83	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++f++eq++ Le +Fe++ + +++ +LA++lgL+ rqV +WFqN+Ra++k Neem_1623_f_1 29 KNKRRFSDEQIRSLELMFENETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWK 83 56779*************************************************9 PP
2	HD-ZIP_I/II	119.4	1.8e-38	30	121	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eq+++LE +Fe+e++Lep++K +lareLglqprqva+WFqn+RAR+k+kqlE+dy+ L+++y++l+++ e+L+ke+++L +l++ Neem_1623_f_1 30 NKRRFSDEQIRSLELMFENETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYSILQANYNNLASRFEALKKEKQALVIQLQK 121 79************************************************************************************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.39E-19	10	87	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.75	25	85	IPR001356	Homeobox domain
SMART	SM00389	1.8E-16	27	89	IPR001356	Homeobox domain
Pfam	PF00046	3.3E-16	29	83	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.5E-19	30	92	IPR009057	Homeodomain-like
CDD	cd00086	5.00E-14	34	86	No hit	No description
PRINTS	PR00031	9.6E-6	56	65	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	60	83	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.6E-6	65	81	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.0E-15	85	127	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MLDGGEYTPA AEPFTCMNDL TTPRKKKCKN KRRFSDEQIR SLELMFENET RLEPRKKLQL 60 ARELGLQPRQ VAIWFQNKRA RWKSKQLERD YSILQANYNN LASRFEALKK EKQALVIQLQ 120 KMNDLLQNKP REQSQCCGQR EAVNSIDSEL DNGDTAKCES EVKPSLSLDR SEQRLGVLSD 180 DDSSIKAEYF GLEEEPNLMT MVEPAESSMT SPEDWGNFES DGLFDQSSSE YQWWDFWS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00320	DAP	Transfer from AT2G46680	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006444770.1	1e-136	homeobox-leucine zipper protein ATHB-7
Refseq	XP_006491341.1	1e-136	homeobox-leucine zipper protein ATHB-7
Swissprot	P46897	2e-81	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A067HEZ9	1e-134	A0A067HEZ9_CITSI; Uncharacterized protein
TrEMBL	A0A2H5P083	1e-134	A0A2H5P083_CITUN; Uncharacterized protein
TrEMBL	V4U1T1	1e-134	V4U1T1_9ROSI; Uncharacterized protein
STRING	XP_006491341.1	1e-135	(Citrus sinensis)
STRING	XP_006444770.1	1e-135	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2498	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	7e-84	homeobox 7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]