PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1639_f_9
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 549aa    MW: 61634.1 Da    PI: 5.8728
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1639_f_9genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS444.19.8e-1361795491374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l+++L++cA+avs+++l +a++l+ +l++++s +g+p+qRl ay++e+L arla+s+s+++k l+++e +   s++ l+++++++ev+P++kf+++
  Neem_1639_f_9 179 LKQVLVTCAKAVSDNELLMADWLMGELRQMVSVTGEPIQRLGAYMLEGLVARLASSGSSICKNLRCKEPA---SADLLSYMHILYEVCPYFKFGYM 271
                    5799*****************************************************************9...9********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg++++ s   +   l+ +g+rL+++A++++vpfef + +  +  d++
  Neem_1639_f_9 272 SANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSMSAyaRGGGLNIVGKRLSNLAKQFKVPFEFCA-ADMSGYDIQ 366
                    *****************************************************888789999************************.777999*** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    l++L v+pgEalaVn++++l++++desv++e++rd++L lvk+lsPkvv++ve+e+++n++ F  rfleal+yy+a+f+s++++lpr+++eri+vE
  Neem_1639_f_9 367 LDKLGVQPGEALAVNFAFMLYHVPDESVTTENYRDRLLVLVKKLSPKVVTLVEHESNTNTAAFYPRFLEALNYYTAMFESIDVTLPRDHKERINVE 462
                    ************************************************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +++l+r++vn++aceg er+erhe l+kWr r+++aGF+p+pls+ +++++k+ll+++ ++ yr+ee++g+l+lgW+dr Lv+ +aWr
  Neem_1639_f_9 463 QHCLARDLVNIIACEGPERVERHELLGKWRLRFTMAGFRPYPLSSVVNATIKTLLENYCDR-YRLEERDGALFLGWMDRDLVASCAWR 549
                    ***********************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.16153530IPR005202Transcription factor GRAS
PfamPF035143.4E-133179549IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MQASRQLKNL VMSGRLYYQP MQEVEAFCLP QFQTLDHHLQ YNDGSKGSHF TVQNSYGQYC  60
TLESSSAIGG YTMYNSPSTV TFSPNGSPMS QQESQSYPHD LRHSPDNAYG SPMSGSCITN  120
DANDLRHKLR ELESVMLGPD SDIIDGIDSV FQHGTNVGSP EMEMYSGRQI IEAISRRDLK  180
QVLVTCAKAV SDNELLMADW LMGELRQMVS VTGEPIQRLG AYMLEGLVAR LASSGSSICK  240
NLRCKEPASA DLLSYMHILY EVCPYFKFGY MSANGAIAEA MKDEDRVHII DFQIGQGSQW  300
ITLIQAFAAR PGGPPHIRIT GIDDSMSAYA RGGGLNIVGK RLSNLAKQFK VPFEFCAADM  360
SGYDIQLDKL GVQPGEALAV NFAFMLYHVP DESVTTENYR DRLLVLVKKL SPKVVTLVEH  420
ESNTNTAAFY PRFLEALNYY TAMFESIDVT LPRDHKERIN VEQHCLARDL VNIIACEGPE  480
RVERHELLGK WRLRFTMAGF RPYPLSSVVN ATIKTLLENY CDRYRLEERD GALFLGWMDR  540
DLVASCAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-6418654826378Protein SCARECROW
5b3h_A6e-6418654825377Protein SCARECROW
5b3h_D6e-6418654825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447746.10.0scarecrow-like protein 21
RefseqXP_006469518.10.0scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A067EX150.0A0A067EX15_CITSI; Uncharacterized protein
STRINGXP_006469518.10.0(Citrus sinensis)
STRINGXP_006447746.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]