PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_16489_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 135aa    MW: 15519.6 Da    PI: 9.1252
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_16489_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM25.83e-081156249
             NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49
                     pGf F P+++e+v   Lk+k ++++l++ e  k++d y++eP+dLp 
  Neem_16489_f_1 11 LPGFGFCPNNSEIV-TLLKNKEANSTLNV-EYCKDIDFYNHEPEDLPI 56
                    69************.89*********999.89**************93 PP
2NAM28.54.3e-096511278128
             NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++g W+ tg+ ke+++++g++    ++++++   + +gekt+W+m+ey+l
  Neem_16489_f_1  65 PRKGSWRMTGSFKEIKDESGKASAEENSFTYH---KVNGEKTQWLMKEYTL 112
                     469****************************9...789999********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-198129IPR003441NAC domain
PROSITE profilePS5100511.06210129IPR003441NAC domain
PfamPF023651.0E-812112IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MASSSTNSTF LPGFGFCPNN SEIVTLLKNK EANSTLNVEY CKDIDFYNHE PEDLPIVLVK  60
NIQTPRKGSW RMTGSFKEIK DESGKASAEE NSFTYHKVNG EKTQWLMKEY TLLKQNKISQ  120
WAFCVVYHKR SPKTK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.15e-12NAC domain containing protein 32