PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1648_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 155aa    MW: 18062.4 Da    PI: 6.4998
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1648_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.32.5e-0989442123
            NAM  42 vePwdLpkkvka....eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvm 123
                     ePwd+ +++ +    +++++yfF++ +k++  g+r nr++ sg+W+   + ke ++   +++    kk +   +g++++ ++  W++
  Neem_1648_f_2   8 QEPWDIWNSYGGndllKNEKLYFFTHFKKNTLYGSRYNRKIGSGVWQGEDEAKEFKACggSEQILRFKKRFRCENGKNSE-QNGGWII 94 
                    59****753333344466789**************************999999999875455557788888887777766.7888986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.711127IPR003441NAC domain
SuperFamilySSF1019419.55E-8894IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MCDLYGDQEP WDIWNSYGGN DLLKNEKLYF FTHFKKNTLY GSRYNRKIGS GVWQGEDEAK  60
EFKACGGSEQ ILRFKKRFRC ENGKNSEQNG GWIIINPSGE VDCIEYHIQE EKKKPCKDLN  120
IKRIQSQCLT LKGCSLISTM TDQIFTSTDF EFLEQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015380915.11e-30NAC domain-containing protein 53-like
RefseqXP_015382069.11e-30NAC domain-containing protein 53-like
TrEMBLA0A067DRR12e-25A0A067DRR1_CITSI; Uncharacterized protein
TrEMBLA0A2H5QWR01e-25A0A2H5QWR0_CITUN; Uncharacterized protein
STRINGXP_006492969.16e-30(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1918526