PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_16665_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

HB-other

Protein Properties

Length: 191aa MW: 21140.3 Da PI: 9.5022

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_16665_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.6	6e-20	18	74	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t++qle+Le+ ++ ++yps++ r+eL+ +lgL++rq ++WF+ rR k++k Neem_16665_f_1 18 KSKRKMKTASQLEILEKTYAVESYPSEAVRAELSVQLGLSDRQLQMWFCHRRLKDRK 74 689****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-19	4	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.06E-17	13	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.584	15	75	IPR001356	Homeobox domain
SMART	SM00389	3.1E-16	17	79	IPR001356	Homeobox domain
Pfam	PF00046	1.6E-17	18	74	IPR001356	Homeobox domain
CDD	cd00086	3.14E-15	18	74	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MEAASEGEKK KPQEGETKSK RKMKTASQLE ILEKTYAVES YPSEAVRAEL SVQLGLSDRQ 60 LQMWFCHRRL KDRKAPPAKR QPKDSQPPAR LTPAGGNELA GSEFVRGGVA VQRIGADVAA 120 MRRCYEMSLP PPPPPPQRSI AELRAIALVE AQLGEPLRED GPILGVEFDP LPPDAFGRPL 180 GKLFRPEFDK M

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024047748.1	1e-75	homeobox-DDT domain protein RLT2 isoform X5
Refseq	XP_024047752.1	1e-75	homeobox-DDT domain protein RLT2 isoform X8
Swissprot	Q9FFH1	3e-48	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A067E2X0	5e-75	A0A067E2X0_CITSI; Uncharacterized protein (Fragment)
TrEMBL	V4W206	2e-74	V4W206_9ROSI; Uncharacterized protein
STRING	XP_006446705.1	4e-75	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25681	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	8e-51	Homeodomain-like transcriptional regulator