PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_16726_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 209aa    MW: 22939.1 Da    PI: 4.5064
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_16726_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-182474155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ykGVr +k +g+Wv+eIr p++   r r++lg+++ +e+Aa+a +aa  +l+g
  Neem_16726_f_1 24 PKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDAPEKAARAFDAALFCLRG 74
                    79*****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.51E-292484No hitNo description
PfamPF008472.8E-112474IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-292583IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-202583IPR016177DNA-binding domain
SMARTSM003803.1E-332588IPR001471AP2/ERF domain
PROSITE profilePS5103221.8522582IPR001471AP2/ERF domain
PRINTSPR003677.7E-92637IPR001471AP2/ERF domain
PRINTSPR003677.7E-94864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVKPSEQTTS ELRSSSSSST SSEPKYKGVR KRKWGKWVSE IRLPNSRERI WLGSYDAPEK  60
AARAFDAALF CLRGPNAKFN FPDNPPSDIA GVGERSLTPP EIQVVAARFA NEEPVRNSSS  120
ASGSASHSTT SDGGAVHVDS DMAIDWSFLS MLDSNEGASD FGLYSGMEYN MNMNITSDHD  180
LYPATEPTFD DNGEDQNGFP QTSSFLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1425821472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12632KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006452945.12e-83ethylene-responsive transcription factor ERF017
SwissprotQ84QC22e-52ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLV4UPI93e-82V4UPI9_9ROSI; Uncharacterized protein
STRINGXP_006452945.16e-83(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-49ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]