PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_16815_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 92aa MW: 10529.2 Da PI: 9.2739

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_16815_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.3	3.7e-18	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ a+ g++Rt+k+c++rw++yl Neem_16815_f_1 15 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 62 79*********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-25	7	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.216	10	66	IPR017930	Myb domain
SMART	SM00717	7.2E-13	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	4.7E-17	15	62	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.42E-23	16	90	IPR009057	Homeodomain-like
CDD	cd00167	1.94E-10	17	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.3E-8	66	89	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MDKAPCNSQD AEVRKGPWTM EEDLILINYI ANHGEGVWNS LAKAAGLKRT GKSCRLRWLN 60 YLRPDVKRGN ITPEEQLLIM DLHAKWGNRL VL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-15	10	89	22	100	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006446526.1	5e-61	myb-related protein 305 isoform X2
Refseq	XP_024950397.1	6e-61	myb-related protein 305 isoform X2
Swissprot	P81391	1e-58	MYB05_ANTMA; Myb-related protein 305
TrEMBL	V4UC01	1e-59	V4UC01_9ROSI; Uncharacterized protein
STRING	XP_006470308.1	1e-58	(Citrus sinensis)
STRING	XP_006446527.1	2e-58	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40350.1	1e-54	myb domain protein 24

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]