PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1683_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 150aa MW: 16550 Da PI: 10.9588

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1683_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.5	2e-10	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G+g W+t + + R+ ++k++w++ Neem_1683_f_2 5 KQKWTAEEEAALKAGVVKHGTGKWRTTLSDPEfsailQSRSNVDLKDKWRN 55 79**********************888888****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.419	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.44E-15	2	66	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-4	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-12	4	56	IPR009057	Homeodomain-like
Pfam	PF00249	2.3E-6	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	4.56E-17	6	57	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MGAPKQKWTA EEEAALKAGV VKHGTGKWRT TLSDPEFSAI LQSRSNVDLK DKWRNINVTA 60 IWGSPQKAKL ALKRTSSTPK HDGRTPVTSK RDAKSQLTPK HDSRIHLTPN HDENGGLKLI 120 ASSTISHLMK KVTKMVHVIL DESAAKISNK

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024947953.1	2e-59	telomere repeat-binding factor 2 isoform X1
Swissprot	Q9FJW5	1e-39	TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBL	V4UJ20	6e-58	V4UJ20_9ROSI; Uncharacterized protein
STRING	XP_006426109.1	1e-58	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3809	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67580.2	5e-42	MYB_related family protein

Publications ? help Back to Top
Lee WK,Cho MH Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana. Nucleic Acids Res., 2016. 44(10): p. 4610-24 [PMID:26857545] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]