PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_16870_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family TCP
Protein Properties Length: 142aa    MW: 15011 Da    PI: 4.5024
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_16870_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP77.92.8e-241632467
             TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ss 67
                    ++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt                   ss
  Neem_16870_f_1  1 MPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTgtvpaiavssstagptpisSS 63
                    9*****************************************444444443333333333222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136921.101139IPR017887Transcription factor TCP subgroup
PfamPF036341.0E-18155IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MPALCAARIF QLTRELGHRS DGETIEWLLR QAEPSIIAAT GTGTVPAIAV SSSTAGPTPI  60
SSSPPSVACR VQPLSSATQG MFVAAPQPNC RLDLCQPLGL QYVGNGFHHM PFTALLLQPA  120
LATAAAEETE EKEEDEVISD RQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428735.12e-61transcription factor TCP11
RefseqXP_006493041.12e-61transcription factor TCP11
SwissprotQ9SJK75e-35TCP11_ARATH; Transcription factor TCP11
TrEMBLV4SSN25e-60V4SSN2_9ROSI; Uncharacterized protein
STRINGXP_006493041.19e-61(Citrus sinensis)
STRINGXP_006428735.19e-61(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152651618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.13e-32TCP family protein