PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1691_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 128aa    MW: 14482.2 Da    PI: 11.1921
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1691_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.46.5e-1275116956
            AP2   9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                    ++ +grW+AeI+         r +lg+++ ae+A + +++a+ kl+g+
  Neem_1691_f_1  75 RP-WGRWAAEIKYG-----GVRLWLGTYDIAEKATRVYDNAAIKLRGP 116
                    45.*******8883.....4**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.1E-232126IPR017392AP2/ERF transcription factor ERF/PTI6
PROSITE profilePS5103216.88465123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-1874123IPR001471AP2/ERF domain
PfamPF008474.9E-775115IPR001471AP2/ERF domain
CDDcd000181.13E-1975122No hitNo description
SuperFamilySSF541714.25E-1575123IPR016177DNA-binding domain
SMARTSM003802.2E-1375127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MNNSGVGTVQ RVVRISTTDH DATDSSSNED REFSHRQNPR RRFVNKTYIK LTPSKNSNTA  60
VLANNKKRIS TNASRPWGRW AAEIKYGGVR LWLGTYDIAE KATRVYDNAA IKLRGPNILT  120
NFSTPPFQ
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104995.11e-31ethylene-responsive transcription factor CRF2
RefseqXP_021909040.11e-31ethylene-responsive transcription factor CRF4
SwissprotQ9SUE37e-25CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A2P5VWK01e-30A0A2P5VWK0_GOSBA; Uncharacterized protein
STRINGevm.model.supercontig_3.434e-31(Carica papaya)
STRINGXP_010104995.14e-31(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-20cytokinin response factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]