PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_17116_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 91aa MW: 10609.4 Da PI: 10.9742

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_17116_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.9	1.7e-16	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l ++v ++G +W++++ g+ R +k+c++rw +yl Neem_17116_f_1 17 KGLWSPEEDQRLRNYVLKHGHACWSSVPINAGLQRNGKSCRLRWINYL 64 678*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-22	12	67	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.392	12	68	IPR017930	Myb domain
SMART	SM00717	2.1E-10	16	66	IPR001005	SANT/Myb domain
Pfam	PF00249	7.2E-15	17	64	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.12E-20	19	91	IPR009057	Homeodomain-like
CDD	cd00167	4.64E-9	20	64	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.6E-7	68	91	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MGCKSSDKPK PKPKHRKGLW SPEEDQRLRN YVLKHGHACW SSVPINAGLQ RNGKSCRLRW 60 INYLRPGLKR GMFTMQEEET ILTLHRLLGN K

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269\|PubMed:11581165, ECO:0000269\|PubMed:19482971}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269\|PubMed:9839469}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021617084.1	2e-57	transcription factor LAF1-like
Swissprot	Q9M0K4	2e-40	LAF1_ARATH; Transcription factor LAF1
TrEMBL	A0A2C9VQX2	3e-56	A0A2C9VQX2_MANES; Uncharacterized protein (Fragment)
STRING	cassava4.1_031686m	6e-57	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25560.1	2e-42	myb domain protein 18

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]