PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_17126_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 254aa    MW: 30517.8 Da    PI: 5.4145
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_17126_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.23e-143711455128
             NAM  55 ekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk..kgelvglkktLvfy........kgrapkgektdWvmheyrl 128
                     ++e y++  +++        +r ++++g W+atg+ k+++ +  + +lvg k+ L+fy        ++r++++ kt+W+mhey+l
  Neem_17126_f_1  37 KNERYYYYLKEN-------DSReVAHQGWWRATGHVKKIYINdeRCHLVGYKRPLTFYrfrdchcnRKRRQRAIKTNWIMHEYSL 114
                     344444444433.......33438899*************98555566**********888887776899999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.2181129IPR003441NAC domain
SuperFamilySSF1019413.66E-1535129IPR003441NAC domain
PfamPF023652.4E-743114IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAHTEGIWDK INIKDGNDDD ANWVQLYTGD YNVALSKNER YYYYLKENDS REVAHQGWWR  60
ATGHVKKIYI NDERCHLVGY KRPLTFYRFR DCHCNRKRRQ RAIKTNWIMH EYSLESFSTE  120
WRLCKIKYKG KTTAQEELEN IRKAGSRKQQ QQQQTLQLDN NIVYETCNNV AENIQMEATE  180
VEQQQTLQLD NNIVYETYNN VAENIQMEAM EVEQQQYPKA LYDPYDYSYY FDDNHQLDQA  240
AADLSEQIIP RLWS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024043277.11e-53NAC domain-containing protein 72-like
STRINGXP_006495018.15e-53(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16224614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-10NAC domain containing protein 100