PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_17203_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 250aa MW: 27643.3 Da PI: 9.6664

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_17203_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.0008	6	27	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++C+++F + + H+r+H Neem_17203_f_1 6 VCKICNRRFANGKAMGGHMRSH 27 6*******************99 PP
2	zf-C2H2	12.4	0.00047	193	215	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F + L H + H Neem_17203_f_1 193 FECPFCDKVFDSGQALGGHKKIH 215 89*********999999999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.889	5	32	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.16	5	27	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	3.3E-8	6	29	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.66E-8	6	27	No hit	No description
PROSITE pattern	PS00028	0	7	27	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.6E-7	152	169	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.66E-8	188	215	No hit	No description
PROSITE profile	PS50157	11.011	193	220	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.4E-9	193	215	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.016	193	215	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	195	215	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MDNKRVCKIC NRRFANGKAM GGHMRSHLAK LPISPKSNDP SPIPSTKPTS SSSSLSNMQS 60 YRSINREFLD LVSDDGESEA ESLKNPTKRR SKRRRRTIAS VVAAAAAPRP TEPESVSSVT 120 ENIFTDEELA MFLVMLAREK WPENEPVKEK EKRFPSYQAL GGHKASHKKM KIQQEGSSNS 180 AGTDVIVLEQ RIFECPFCDK VFDSGQALGG HKKIHFSYLP ATKTSPNSGK TLIDLNLPAP 240 PEDDSEVSQV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018840099.1	3e-65	PREDICTED: zinc finger protein ZAT4-like
TrEMBL	V4RL22	4e-68	V4RL22_9ROSI; Uncharacterized protein
STRING	XP_006421633.1	7e-69	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16232	8	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	4e-30	C2H2-like zinc finger protein