PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_17301_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 294aa    MW: 33142.1 Da    PI: 8.1274
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_17301_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-18177227255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr ++ +g+++AeIrdp++ng  +r++lg+++t+e+Aa  +++a+  ++g
  Neem_17301_f_1 177 RYRGVRTRP-WGKYAAEIRDPKKNG--ARVWLGTYDTPEGAALVYDKAAFDMRG 227
                     69****999.***********9998..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.906177235IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-21177236IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.5E-30177236IPR001471AP2/ERF domain
CDDcd000187.73E-29177237No hitNo description
PfamPF008477.6E-12177227IPR001471AP2/ERF domain
SMARTSM003805.9E-37177241IPR001471AP2/ERF domain
PRINTSPR003679.2E-12178189IPR001471AP2/ERF domain
PRINTSPR003679.2E-12217237IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MFAETESISP SDWALLESIR HHLFDDNFEL DDNISMNFPL QNFSEWNFDL LQNFLSDDFD  60
IPISSSPSPS PTSSSLATTI SNIALAPVYS PTSSFNSFFV AERLRDFPPQ VSNTNSINME  120
PHKALHHAVN LGLFSFDDQV HDNQLEASKK KTTHDADMTN RRLAAARQTQ TKQQVVRYRG  180
VRTRPWGKYA AEIRDPKKNG ARVWLGTYDT PEGAALVYDK AAFDMRGSKA KLNFPHLLGK  240
VHFKSVGVNN KRRCPEPTPS SPCSCSSSSS STTLHEETPK PKRRRLLEQI QQLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-27178235360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-27178235663ATERF1
3gcc_A2e-27178235663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281285KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445413.12e-67ethylene-responsive transcription factor 2
TrEMBLV4TEA04e-66V4TEA0_9ROSI; Uncharacterized protein
STRINGXP_006464434.16e-67(Citrus sinensis)
STRINGXP_006445413.16e-67(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-40ethylene-responsive element binding factor 13