PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_17348_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

SBP

Protein Properties

Length: 886aa MW: 98017.1 Da PI: 7.1185

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_17348_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.4	6.2e-41	149	226	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Neem_17348_f_1 149 VCQVEDCRADLSNAKDYHRRHKVCDMHSKATKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 226 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.3E-32	146	211	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.129	147	224	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.67E-38	148	229	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.7E-29	150	223	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 886 aa Download sequence Send to blast
MEAKFGGKVK NLYGPVVSDL KAVGKRSLEW DLNDWKWDGD LFTASPLNSV PSDCRNRQLF 60 PVGPEIPANG GRSNSSSSCS EDNNVGNEKG KRELEKRRRV VVVEDEELNN DEVGSLNLNL 120 GGQVYPVVDG DVKSGKKTKI VGSAVSRAVC QVEDCRADLS NAKDYHRRHK VCDMHSKATK 180 ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC RRRLAGHNKR RRKTHPDNVV SGGSLNDERG 240 SSYLLISLLR ILANMHSNNS DQTKDQDLLS HLFRNLAGVV GTNNVRNISG LLQGSQGLLN 300 AGTSNGNVEK VSDVVSTGPE PVRSSASASM IDHCIRFSDP LRSVGQSGSV PASDLIQKRI 360 AAHDARSGIV QGLLGCQSKE AFPSRDSLSA KANELEATFG RSKMSNIDLN NVYDDSQDHI 420 ENLERSINLG TGSLCSRLWV QPASNKSTPP QTSANSDSTS SQSPSSSSGD AQSRTDRIVF 480 KLFGKDPNDF PIVLRRQILD WLSHSPTDIE SYIRPGCIIL TIYLRLGKPT WEELCCDLGS 540 SLRKLLDSSD DSFWRMGWLY ARVQHSVAFV YNGLLLLPLI SSVKPIAVSV SARAKFMVKG 600 FNLSWSTTRL LCAIEGKYLV QEACYDLMDG ADEHDELQHL SFVCSMPNVY GRGFIEVEDH 660 GLSSSFFPFI VAEQEVCSEI CMLEGVIEAA EISDNFQKIS EKTEIKDQAL DFVHEMGWLL 720 HRSRVKFRLG HLDSNSGLFS FKRFRWLMEF SMERDWCAVV KKLLGILFEG TVDTGEHTSI 780 ELALLDMGLL HRAVRRNCRP MVELLLHFSP GKELGKLGPQ QKQLVDKAGS SFIFKPDVIG 840 PAGLTPLHVA ACRDDAEHVL DALTDDPGLV RFHLLIPVLL NSNPLA

Sequence ? help Back to Top

Protein Sequence Length: 886 aa Download sequence Send to blast

MEAKFGGKVK NLYGPVVSDL KAVGKRSLEW DLNDWKWDGD LFTASPLNSV PSDCRNRQLF  60
PVGPEIPANG GRSNSSSSCS EDNNVGNEKG KRELEKRRRV VVVEDEELNN DEVGSLNLNL  120
GGQVYPVVDG DVKSGKKTKI VGSAVSRAVC QVEDCRADLS NAKDYHRRHK VCDMHSKATK  180
ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC RRRLAGHNKR RRKTHPDNVV SGGSLNDERG  240
SSYLLISLLR ILANMHSNNS DQTKDQDLLS HLFRNLAGVV GTNNVRNISG LLQGSQGLLN  300
AGTSNGNVEK VSDVVSTGPE PVRSSASASM IDHCIRFSDP LRSVGQSGSV PASDLIQKRI  360
AAHDARSGIV QGLLGCQSKE AFPSRDSLSA KANELEATFG RSKMSNIDLN NVYDDSQDHI  420
ENLERSINLG TGSLCSRLWV QPASNKSTPP QTSANSDSTS SQSPSSSSGD AQSRTDRIVF  480
KLFGKDPNDF PIVLRRQILD WLSHSPTDIE SYIRPGCIIL TIYLRLGKPT WEELCCDLGS  540
SLRKLLDSSD DSFWRMGWLY ARVQHSVAFV YNGLLLLPLI SSVKPIAVSV SARAKFMVKG  600
FNLSWSTTRL LCAIEGKYLV QEACYDLMDG ADEHDELQHL SFVCSMPNVY GRGFIEVEDH  660
GLSSSFFPFI VAEQEVCSEI CMLEGVIEAA EISDNFQKIS EKTEIKDQAL DFVHEMGWLL  720
HRSRVKFRLG HLDSNSGLFS FKRFRWLMEF SMERDWCAVV KKLLGILFEG TVDTGEHTSI  780
ELALLDMGLL HRAVRRNCRP MVELLLHFSP GKELGKLGPQ QKQLVDKAGS SFIFKPDVIG  840
PAGLTPLHVA ACRDDAEHVL DALTDDPGLV RFHLLIPVLL NSNPLA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	9e-30	149	223	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	99	KRRRV
2	218	224	KRRRKTH

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006488746.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
Refseq	XP_006488747.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	V4S1A6	0.0	V4S1A6_9ROSI; Uncharacterized protein
STRING	XP_006488745.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3030	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]