PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_17557_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 184aa    MW: 21543.4 Da    PI: 5.8489
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_17557_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.53.3e-161512710128
             NAM  10 tdeelvveyLkkkvegkkleleevikev..diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102
                     +d+el  + L++k++++++e+e  i+e+  di ++ P++L  + +++ ++w+fF+++  ++        + ++g+Wk+t k +e +  ++ lvg+
  Neem_17557_f_3  15 SDHELW-CILERKIRNQHIEEEISITEIqdDIKSLSPQELYLHPTHGFRKWHFFAQKVDQS-------HSPAQGFWKQTSKRREFII-SEYLVGI 100
                     799998.77************777*999889*********866667789*****9987643.......34568************99.899**** PP

             NAM 103 kktLvfy.kgrapkgektdWvmheyrl 128
                     k t++++  g+ +  ++tdW ++e++l
  Neem_17557_f_3 101 KSTFTYFmIGEGRGISETDWRIDEFSL 127
                     ******95456666679********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.5276147IPR003441NAC domain
SuperFamilySSF1019416.15E-1310128IPR003441NAC domain
PfamPF023652.1E-910127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAHSEFEESF RRNLSDHELW CILERKIRNQ HIEEEISITE IQDDIKSLSP QELYLHPTHG  60
FRKWHFFAQK VDQSHSPAQG FWKQTSKRRE FIISEYLVGI KSTFTYFMIG EGRGISETDW  120
RIDEFSLRCI DLRKDPEGVT LWYIAPEIIL AMHDTMARKT ADAEEVRGYV EAVVNGLGAN  180
VPKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-11NAC domain containing protein 1