PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_17575_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

ZF-HD

Protein Properties

Length: 133aa MW: 14216.6 Da PI: 6.2422

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_17575_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	106.4	1.7e-33	63	119	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY eC+kNhAas+Gg+avDGC+Efm+s geegt+aal+CaACgCHR+FHRrev++e Neem_17575_f_1 63 NVRYAECQKNHAASVGGYAVDGCREFMAS-GEEGTPAALTCAACGCHRSFHRREVQTE 119 79************************9.999*******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-29	38	128	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	4.4E-31	63	116	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.7E-28	65	116	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.012	66	115	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MPVSDCGSGS GFQNSRTISR GFGGEEEEGG DNFVNSEMRK RQVVLRREEP SRTSSTSSVT 60 VRNVRYAECQ KNHAASVGGY AVDGCREFMA SGEEGTPAAL TCAACGCHRS FHRREVQTEV 120 VCECSSPPPS TGS

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269\|PubMed:21455630}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021297644.1	2e-57	mini zinc finger protein 2-like
Swissprot	Q9LJW5	2e-43	MIF2_ARATH; Mini zinc finger protein 2
TrEMBL	A0A061EGD2	7e-54	A0A061EGD2_THECC; Mini zinc finger 2 isoform 2 (Fragment)
STRING	EOY03457	1e-54	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM944	28	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	3e-40	mini zinc finger 2

Publications ? help Back to Top
Bollier N, et al. At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato. Plant Cell, 2018. 30(1): p. 83-100 [PMID:29298836]