PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_17646_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GeBP
Protein Properties Length: 205aa    MW: 23420.9 Da    PI: 4.9173
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_17646_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57368.61.3e-2123111497
          DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                     +r w+ + ei++L G+i f +++  +p+ + ++f+ f+k+s + +++++ql++K++++ kKf+++  +      +++s++h++k++els+kiWg
  Neem_17646_f_2  23 KRTWNADEEIAILNGVIRFSTEKQLNPFTERTEFVAFMKESFDTNFTETQLFSKLKNMEKKFTRNLIN-----GKAISEPHQNKVLELSSKIWG 111
                     799**************************************************************999.....557999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.4E-1923111IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MVEDYSPELQ RKTTDEKQPS GLKRTWNADE EIAILNGVIR FSTEKQLNPF TERTEFVAFM  60
KESFDTNFTE TQLFSKLKNM EKKFTRNLIN GKAISEPHQN KVLELSSKIW GAAATAPAAE  120
LDLSLLCGIR GVHLDLDEMF FGFGENIMEE VLAKTGEAES AEFKKLWKEI QVLELMLTMK  180
RARLVEFEAK IIFDAFNLSK NAVTL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2282434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.17e-13DNA-binding storekeeper protein-related transcriptional regulator