PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_17750_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 253aa    MW: 28608.1 Da    PI: 6.9488
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_17750_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.24.8e-34642041128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 
                     lp+G++F+Ptd+e++ e+L++kv +++      ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      
  Neem_17750_f_1  64 LPAGVKFDPTDNEIL-EHLEAKVLSDSrklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtdtdgs 154
                     799***********9.99****9999956644322..22222333336**********.555666777******************744345455 PP

             NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     + +W++tgk+++v++ +ge++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Neem_17750_f_1 155 ETRWHKTGKTRAVFV-GGEVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 204
                     778************.9*************66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-3858223IPR003441NAC domain
PROSITE profilePS5100534.1864223IPR003441NAC domain
PfamPF023652.3E-1565204IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MTWCNNSDDE EVAAAIRITT TSAEEQHCVT AAKTTQEIRT ITCPSCGHTI QFQDQTGIHD  60
MPGLPAGVKF DPTDNEILEH LEAKVLSDSR KLHPLIDEFI PTLEGENGIC YTHPEKLPGV  120
SKDGQIRHFF HRPSKAYTTG TRKRRKVHTD TDGSETRWHK TGKTRAVFVG GEVKGFKKIL  180
VLYTNYGRQR KPEKTNWVMH QYHLGNNEEE KDGELVVSKV FYQTQPRQCG SSSIKEDSLE  240
GNLIDRIAEW GIS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811298.11e-148PREDICTED: NAC domain-containing protein 73-like
RefseqXP_018811299.11e-148PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-123NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2N9G7P61e-149A0A2N9G7P6_FAGSY; Uncharacterized protein
STRINGXP_006467723.11e-146(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-125NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]