PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1788_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 590aa    MW: 65747.1 Da    PI: 6.3467
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1788_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS429.62.5e-1312115891373
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lL++cA+a+s+++ +  ++l+++ +  +s +g+p+qRl ay++e+L ar  +s+s++y+al+++e +   s++ l+++++++e++P+lkf+++
  Neem_1788_f_2 211 LKQLLIACAKALSENNINDFDKLIEKARGAVSISGEPIQRLGAYMVEGLVARKEKSGSNIYRALRCREPE---SKDLLSYMHILYEICPYLKFGYM 303
                    689******************************************************************9...9********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                    +aN aI ea ++e+r+HiiDf+i qG+QW++LlqaLa++p+gpp++RiTg+++p s+  + + le++g+rLa + +++++p+ef++ v     d++
  Neem_1788_f_2 304 AANGAIAEACKNEDRIHIIDFQIAQGTQWMTLLQALAAKPSGPPHVRITGIDDPVSKyaRGDGLEAVGRRLAAISQKFNIPVEFHP-VPVFAPDVT 398
                    ******************************************************999999**************************.688899*** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrll.........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                     e+L+v+pgEalaVn+ lqlh+++         desv+++++rde+L+++ks +Pkvv++veqe+++n++ Fl rf+e+l+yy a+f+s+++++pr
  Neem_1788_f_2 399 REMLDVRPGEALAVNFPLQLHHIPdesgrhhipDESVDVNNPRDELLRMMKSFNPKVVTLVEQESNTNTAAFLPRFIETLNYYLAMFESIDVTVPR 494
                    ************************9999999999************************************************************** PP

           GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    +++eri+vE+++l+r+ivnv+aceg+er+erhe ++kW++r+++aGF++ pls+++++ ++ llr ++ + y++ e +g+++lgWk+r+Lvs+SaW
  Neem_1788_f_2 495 DQKERINVEQHCLARDIVNVIACEGRERVERHELFGKWKSRFTMAGFQQCPLSSYVNSVIRNLLRCYS-EHYTLVETDGAMLLGWKERALVSASAW 589
                    ****************************************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.733185571IPR005202Transcription factor GRAS
PfamPF035148.7E-129211589IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MESHQIFGYS VAGAGISHSS SHPTVPSVPN RLFGSLKFDV GNSPNSPFST PFECDTITTL  60
SDSQEQHSST ENPSGLSPSC NSSLESNGYF HQLSPAADSL VLCSGWTSYL QNTNCSQKIK  120
HALQELETVL MGPDEDEEVT RRNTSGGESS MPQAPGQRSK AWNLERRGSH VIQPQPSLIS  180
RYRQSGEGAE IGNRQMTIEE SSWHSFPSGN LKQLLIACAK ALSENNINDF DKLIEKARGA  240
VSISGEPIQR LGAYMVEGLV ARKEKSGSNI YRALRCREPE SKDLLSYMHI LYEICPYLKF  300
GYMAANGAIA EACKNEDRIH IIDFQIAQGT QWMTLLQALA AKPSGPPHVR ITGIDDPVSK  360
YARGDGLEAV GRRLAAISQK FNIPVEFHPV PVFAPDVTRE MLDVRPGEAL AVNFPLQLHH  420
IPDESGRHHI PDESVDVNNP RDELLRMMKS FNPKVVTLVE QESNTNTAAF LPRFIETLNY  480
YLAMFESIDV TVPRDQKERI NVEQHCLARD IVNVIACEGR ERVERHELFG KWKSRFTMAG  540
FQQCPLSSYV NSVIRNLLRC YSEHYTLVET DGAMLLGWKE RALVSASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6421858926378Protein SCARECROW
5b3h_A3e-6421858925377Protein SCARECROW
5b3h_D3e-6421858925377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF4406471e-162JF440647.1 Citrus medica var. sarcodactylis GRAS family transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006452128.10.0chitin-inducible gibberellin-responsive protein 1
RefseqXP_006475287.10.0chitin-inducible gibberellin-responsive protein 1-like
RefseqXP_024953185.10.0chitin-inducible gibberellin-responsive protein 1-like
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLV4TXN90.0V4TXN9_9ROSI; Uncharacterized protein
STRINGXP_006475287.10.0(Citrus sinensis)
STRINGXP_006452128.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145381022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]