PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_18290_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

SRS

Protein Properties

Length: 228aa MW: 25439.5 Da PI: 8.6311

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_18290_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	180.4	7.5e-56	13	146	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 g+a+CqdCGnqakk+C+++RCRtCCk rgf+C+th+kstW+pa++rr+r ++++ + ++ ++ + +++kr re+ +s++ Neem_18290_f_1 13 GGARCQDCGNQAKKNCVYMRCRTCCKRRGFECQTHIKSTWIPAYRRRQRYNHQQLLPAQ-GQQLQGHNPKRLREN----------------TSST 90 7889*******************************************8888776443.344444445555443................2233 PP DUF702 99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++ ++P+e+s+ea frcvrvss++d+++++aYqtav+igGhvfkGiLydqG+e+ Neem_18290_f_1 91 GSQIGNFPAEMSTEATFRCVRVSSIEDADDNFAYQTAVTIGGHVFKGILYDQGPES 146 455788*********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.0E-58	14	145	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.5E-27	17	58	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.5E-25	97	144	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MMLNMRQLGA ELGGARCQDC GNQAKKNCVY MRCRTCCKRR GFECQTHIKS TWIPAYRRRQ 60 RYNHQQLLPA QGQQLQGHNP KRLRENTSST GSQIGNFPAE MSTEATFRCV RVSSIEDADD 120 NFAYQTAVTI GGHVFKGILY DQGPESCYNV GESSSSEPPL PQPQPQPQQQ QPYYPFSVAN 180 LNTATTTTAT ATISNTSAAN ETLFPPPYTF PFTSFMSGGM QFFPHPKS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022725081.1	2e-85	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9SD40	3e-57	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A2H5PKM1	5e-82	A0A2H5PKM1_CITUN; Uncharacterized protein
STRING	POPTR_0009s12450.1	2e-80	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9188	26	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	2e-51	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]