PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_18349_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

G2-like

Protein Properties

Length: 246aa MW: 27727.4 Da PI: 7.7302

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_18349_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	38.5	2.5e-12	19	43	2	26
G2-like 2 prlrWtpeLHerFveaveqLGGsek 26 prlrWtpeLH++Fv+a+e+LGG+ek Neem_18349_f_1 19 PRLRWTPELHHCFVHAIERLGGHEK 43 8**********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.9E-11	15	45	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MGSCGRSGAV RQYIRSKVPR LRWTPELHHC FVHAIERLGG HEKKNSTHQR RQAFDDCVDE 60 VNDDHMGFHQ YSRSEAIKES DSSQCIYSTT SLVPSKRART ETRSSISDQN LQCSQGICET 120 APSNPYHFDD YLQQNKGNVN EHNKRIKECY GLVEKQEDQK GSKEVRQKHD HKWGGEEGNN 180 FELSLSLSLP QPSSQRSNGC SSTSEMGGEA ISSYPNSNNS FKDCFRSSGR GRYNVNLDLS 240 IALCGT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006470870.1	2e-78	two-component response regulator ARR12
TrEMBL	A0A067ERQ0	2e-75	A0A067ERQ0_CITSI; Uncharacterized protein
STRING	XP_006470870.1	8e-78	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	7e-15	G2-like family protein