PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_18362_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 269aa MW: 28417.6 Da PI: 5.2436

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_18362_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.7	0.00024	221	241	10	30
HHHHHHHHHHHHHHHCTSCCC CS HLH 10 rrRRdriNsafeeLrellPka 30 r RR+ri +++ L+el+P+a Neem_18362_f_1 221 RLRRERIAERMKALQELVPNA 241 88*****************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MQPCSGEMQG INSLLTNGGG NDQQQQQQSH QQIHHQNAQF DPTSQDDFLE QMLSSLPSCS 60 WTDLKSPWVD LNPNAITTAN KNSRDLSDET APCSQENVGF QFDESMILAS KMRQHQISST 120 GGGSNSAAAA AAAAKLMMQQ QQQQQMIMAA ARGGMGLPLT LGNGAENDVV DGSSFKCQGA 180 TMQTPNFGAS GPVMNQTPQP QASGSNGGAT GGNTPAQPKQ RLRRERIAER MKALQELVPN 240 ANKVLSMSRL GGAAAVAPLV ADMSSEVTN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	220	225	RLRRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006453668.1	6e-87	transcription factor bHLH66
Refseq	XP_006473971.1	6e-87	transcription factor bHLH66
TrEMBL	A0A067F7D8	5e-89	A0A067F7D8_CITSI; Uncharacterized protein
STRING	XP_006473971.1	2e-86	(Citrus sinensis)
STRING	XP_006453668.1	2e-86	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3042	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	7e-09	LJRHL1-like 1