PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_187_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

LBD

Protein Properties

Length: 229aa MW: 24741.3 Da PI: 8.4914

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_187_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.2	1.9e-31	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P++G+vg+++++++ql+q+++ Neem_187_f_1 4 SCNGCRVLRKGCSDDCSIRPCLqwirnPQSQANATLFLAKFYGRAGLVNLINAGPENLRPAIFKSLLYEACGRIVNPIHGSVGLMWSGSWQLCQAAV 100 6************************************************************************************************ PP DUF260 93 elallkee 100 e++l +e+ Neem_187_f_1 101 EAVLKGEP 108 *9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.842	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-25	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MRVSCNGCRV LRKGCSDDCS IRPCLQWIRN PQSQANATLF LAKFYGRAGL VNLINAGPEN 60 LRPAIFKSLL YEACGRIVNP IHGSVGLMWS GSWQLCQAAV EAVLKGEPIT PLSSESSLKA 120 GDIRHVSKDE SAAAVGDRLH KVKSRSRFKR SAPKPKLKAE PVLVEAKFES LLDKLGGSTS 180 RTRELSQPDS EEADSLSVET VEASLAKPDA ADGSEVELEL TLGLGKWVP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006485788.1	1e-116	LOB domain-containing protein 41
Swissprot	Q9M886	2e-76	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A067F1R7	1e-114	A0A067F1R7_CITSI; Uncharacterized protein
STRING	XP_006485788.1	1e-115	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18027	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	8e-79	LOB domain-containing protein 41