PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_187_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family CO-like
Protein Properties Length: 420aa    MW: 46762.5 Da    PI: 5.1126
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_187_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.33.2e-081658339
      zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                  +r C+ + +k+++++C  ++ +lC+ C  + H+       H++
  Neem_187_f_3 16 ARACDGCLRKRARWYCAADDAFLCQGCDASVHSAnqlasrHER 58
                  578*****************************65777777776 PP
2CCT68.22.2e-23362405144
           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                   Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Neem_187_f_3 362 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 405
                   9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.6E-101461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5231461IPR000315B-box-type zinc finger
PfamPF006439.6E-71659IPR000315B-box-type zinc finger
CDDcd000211.31E-71761No hitNo description
PROSITE profilePS5101716.083362404IPR010402CCT domain
PfamPF062035.6E-18362404IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MISEKKAANA LGGKTARACD GCLRKRARWY CAADDAFLCQ GCDASVHSAN QLASRHERIR  60
LGVASSKLNG MVNDKETAPL WHQGFTRKAR TPRPNKAMLL QHAKDEEKVV NSNEPIVPEI  120
GSEEGSLDES TEEQLLYQVP VFDPFAAELG CDIIGSEGND QAAAGKGEEN MISDGYGQDG  180
TRDLDDLHGF LPSDMDLAEF AAEVESLLGG GAVDEDSCDV KDLGLLRCKE ENDHADVCFS  240
EQIAVKIKDE EVEGVAAIDW NFDYESPLIG EEEEKAVIQV ETTTMNTECK SEMKKNVSLK  300
LNYDAVITAW ASLGCPWTTG RRPEFNPNDC WPDCMVSCCK DVHHPYRGLL GCHMGGSSDG  360
GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRTSFVET NNTFPNYLNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372388RRTRLFSKKIRYEVRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440964.11e-173zinc finger protein CONSTANS-LIKE 6
TrEMBLV4VMY61e-171V4VMY6_9ROSI; Uncharacterized protein
STRINGXP_006440964.11e-172(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.14e-99B-box type zinc finger protein with CCT domain