PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_18809_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 121aa MW: 13857.3 Da PI: 10.7218

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_18809_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.1	1.3e-07	10	43	2	39
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-ST CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKls 39 r+ n+ E++RR ++++ + +L +l+P++ p Kls Neem_18809_f_1 10 RAQRNIKEKNRRMQMRHLLLKLASLVPPQ---P-SKLS 43 8889************************6...3.4555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.47E-7	6	52	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.839	8	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.6E-6	10	52	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-4	10	42	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MARRTSNASR AQRNIKEKNR RMQMRHLLLK LASLVPPQPS KLSVPELVDR ATMNLICGSM 60 NRNFMFYEII GVLEDEGAEV IDATQLNTGD RIIYIIKSKA IISRIGFETS RVQERLKDLI 120 L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024046481.1	2e-40	transcription factor bHLH167
TrEMBL	A0A2H5PEV9	2e-38	A0A2H5PEV9_CITUN; Uncharacterized protein
TrEMBL	A0A2H5PEY1	2e-38	A0A2H5PEY1_CITUN; Uncharacterized protein
STRING	XP_006446341.1	6e-38	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2382	21	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10585.1	2e-14	bHLH family protein