PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_19350_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 464aa    MW: 51525.4 Da    PI: 8.7948
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_19350_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.61.8e-15379426552
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                     +r+rr++kNRe+A rsR+RK+a++ eLe +  +L++eN  Lk+ l e+
  Neem_19350_f_1 379 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENNHLKQDLGEI 426
                     79****************************************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-13375439IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.645377429IPR004827Basic-leucine zipper domain
PfamPF001702.2E-13379426IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.13E-11379425No hitNo description
CDDcd147075.84E-22379433No hitNo description
Gene3DG3DSA:1.20.5.1706.5E-14379431No hitNo description
PROSITE patternPS000360382397IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010187Biological Processnegative regulation of seed germination
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MVIPEAETLS QGEVEPAVHS EQQQKNHLFS SLGRQSSIYA LTLDEFQHTL SESGKNFGSM  60
NMDEFLTSIW NAEENQAINS TTNVNSSNAM TNHQTQLTLN DASSHRGIVK QPSLARQSSL  120
TLPAPLCRKT VDEVWSEIHE QDQQQNNNSN QSHGNNAQNL ETTQRQPTFG EMTLEDFLIK  180
AGIVREQQHT SAAQPTQPQQ HFGMYPTNNN PVMSPAFGRP LMGMTGISGG GRNTAGIGTT  240
FQQMPPGCSV VGTESSTYIG SEKRNGGYSV TQLQQQPPPA QQVIWYIGSE KRNGGYSVTQ  300
LQQQPPPAQQ VIYSGRVGNG GGYASGQIGV VSSMSPVSSE AMCNNQQVDS SGSQYGMDQM  360
GSIRKKRIID GPVEKVVERR QRRMIKNRES AARSRARKQA YTVELEAELN QLKEENNHLK  420
QDLGEIERKR KQQYFEDLKM KAYTKAQKAK EKLRIMRRNS SCPL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00294DAPTransfer from AT2G36270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430223.11e-171protein ABSCISIC ACID-INSENSITIVE 5
RefseqXP_024037832.11e-171protein ABSCISIC ACID-INSENSITIVE 5
TrEMBLA0A067F1A91e-173A0A067F1A9_CITSI; Uncharacterized protein
STRINGXP_006430223.11e-171(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92012536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36270.14e-54bZIP family protein