PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_19533_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Dof

Protein Properties

Length: 253aa MW: 27745 Da PI: 9.9794

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_19533_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.5	5.9e-38	32	92	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ ++cprC+s ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+++ Neem_19533_f_1 32 QQQPQRCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRTK 92 68899***************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.2E-32	34	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.64	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-16	42	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MQQERGGSEE KKPQNSQDRR LKPMQGGDNQ QQQQPQRCPR CESLNTKFCY YNNYSLSQPR 60 YFCKTCRRYW TQGGTLRNVP VGGGCRKGKR TKTSSSGENS RSSQSLPPAP PQQVQQNLTT 120 AQSILSSNPL ITTGPVLRTK EPGNLAAPSS ISSMGSFYPT GGFLSSLASI QPSNHPQPFN 180 HQPVNQALNV GAGDQMGGSS NLGLLQGYST VPPFGSSQHQ QIQQTQIYLM GNRDKIVNPM 240 YPPSEESLIH SLI

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	9e-40	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	9e-40	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016698133.1	1e-100	PREDICTED: dof zinc finger protein DOF1.2-like
Refseq	XP_016698134.1	1e-100	PREDICTED: dof zinc finger protein DOF1.2-like
Refseq	XP_016698136.1	1e-100	PREDICTED: dof zinc finger protein DOF1.2-like
Refseq	XP_016698137.1	1e-100	PREDICTED: dof zinc finger protein DOF1.2-like
TrEMBL	A0A2P5X787	1e-100	A0A2P5X787_GOSBA; Uncharacterized protein
STRING	Gorai.009G168400.1	1e-95	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15986	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	2e-21	Dof family protein