PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_19547_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 247aa MW: 27862.4 Da PI: 7.078

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_19547_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0014	130	152	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C C++ F++ +L H+r+H Neem_19547_f_1 130 HMCYVCHQNFRSLKSLYGHMRKH 152 68********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.621	79	106	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.0E-7	80	99	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.95E-5	80	152	No hit	No description
Pfam	PF13912	3.7E-4	130	154	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.871	130	157	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	132	152	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MAQAQEQTHF PSLAADKVAA AAFQAASEDL IKEENQPVFE ADDLVDSDTH ASLSLKLKIP 60 RPDVIVEDLQ RHPLSDVLRT CDECGKQFIS GKALGGHKRA CLQKKNIQKQ KVKNVVSVKL 120 DGDQTSAGLH MCYVCHQNFR SLKSLYGHMR KHPDREWRGI QPPPQHENLC ISSTVSDYDD 180 QDHGEDVYHR DDEDRGVDYC SDNSAVDLVD TLKGWSVKAK RGLKIAQSRR RSEDLIRFRR 240 LVLVMGC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006452771.1	1e-39	transcriptional regulator ATRX homolog
TrEMBL	V4UTT6	3e-38	V4UTT6_9ROSI; Uncharacterized protein
STRING	XP_006452771.1	6e-39	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6618	24	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	3e-18	C2H2 family protein