PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_19563_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

HSF

Protein Properties

Length: 203aa MW: 23309.1 Da PI: 7.7912

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_19563_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.7	2.5e-35	30	121	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+ +++++sw e++++fvv+ + efa+++Lp++Fkh+nf+SFvRQLn+YgFkk+ ++ weF++++F+kg k+ll++ Neem_19563_f_1 30 FLTKTYQLVDDPLTDHIVSWGEDQTTFVVWRPPEFARDLLPNFFKHNNFSSFVRQLNTYGFKKIVADR---------WEFANEYFRKGAKHLLSE 115 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+ks Neem_19563_f_1 116 IHRRKS 121 **98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.9E-37	21	113	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.1E-56	26	119	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	8.43E-33	27	119	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	5.0E-31	30	119	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.7E-19	30	53	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.7E-19	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	69	93	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.7E-19	81	93	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MALCSAAAME KSCEEMVFSV DSQKAVPAPF LTKTYQLVDD PLTDHIVSWG EDQTTFVVWR 60 PPEFARDLLP NFFKHNNFSS FVRQLNTYGF KKIVADRWEF ANEYFRKGAK HLLSEIHRRK 120 SPQHNHQNHV KPVSSSFEQR SAATEPTQIR ELGRSSEDDD DGNINGEEQI KSSTVKLFGV 180 PLSGKKRLHP SARKIDDHDH QRL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	5e-21	26	119	26	129	Heat shock factor protein 1
5d5v_B	5e-21	26	119	26	129	Heat shock factor protein 1
5d5v_D	5e-21	26	119	26	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269\|PubMed:16202242}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015583337.1	3e-79	heat stress transcription factor B-4
Swissprot	Q7XHZ0	1e-65	HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBL	B9T4X0	2e-87	B9T4X0_RICCO; Uncharacterized protein
STRING	XP_002533289.1	4e-88	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2900	28	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	4e-64	heat shock transcription factor B4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]