PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_19759_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 213aa    MW: 22787 Da    PI: 4.2628
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_19759_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding316e-10177213138
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 
                      rg W + Ed +l+++v ++G+ +W++Ia+++  gR++k
   Neem_19759_f_1 177 RGHWRPAEDTKLKELVGLYGPQNWNLIAEKLE-GRSGK 213
                      899*****************************.**986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.774172213IPR017930Myb domain
SuperFamilySSF466891.33E-7175212IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-10176213IPR009057Homeodomain-like
PfamPF002496.4E-9177213IPR001005SANT/Myb domain
CDDcd001673.75E-8180213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MANKCIIYGA DNTNNLAYHS FCTPSSSLTP PPPSSLSMVF ADMGSLSLSP NYGGAVSAAS  60
QDIYPCKSSL SLSPNYGGAV SAASQDIYPC KSSEMENEGA CWSFPFMENG SSTTGNFEEQ  120
HNIDVNVVSK GSDCSDGFGE NSESMIHDID LNEEFNPNEN SVTGKETDGG QTKICARGHW  180
RPAEDTKLKE LVGLYGPQNW NLIAEKLEGR SGK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022726643.11e-59transcription factor MYB117-like
TrEMBLA0A0B0NX304e-54A0A0B0NX30_GOSAR; Transcription factor MYB44-like protein
TrEMBLA0A2P5XVG34e-54A0A2P5XVG3_GOSBA; Uncharacterized protein
TrEMBLA0A438G4R35e-54A0A438G4R3_VITVI; Transcription factor MYB105
TrEMBLF6HPQ34e-54F6HPQ3_VITVI; Uncharacterized protein
STRINGVIT_01s0026g02600.t017e-55(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-19myb domain protein 105