PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_19784_a_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GeBP

Protein Properties

Length: 160aa MW: 18608.3 Da PI: 5.1642

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_19784_a_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	48.9	1.8e-15	54	135	6	93
DUF573 6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 + e ei++L G+i f +++ +p+ + ++f+ f+k+s ++++ k+ql++K++++Kk f ++ + +++s++h++kifels+ Neem_19784_a_2 54 SSNAEEEIIILNGVIRFSTEKRLNPFTERTEFVAFLKESFDANFPKTQLFSKLKNMKK-FMRNLIN-----GNAISEPHQNKIFELSR 135 557899************************************************95.6666655.....47899********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.0E-12	53	135	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MERKVKAAPF GEEESCKDLR VEDSYDNPKD DEDYESGIEK KTTEEKQPSG LKRSSNAEEE 60 IIILNGVIRF STEKRLNPFT ERTEFVAFLK ESFDANFPKT QLFSKLKNMK KFMRNLINGN 120 AISEPHQNKI FELSRYGVLL LLLLLLCLIH HCFVELEECI

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22824	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	7e-10	DNA-binding storekeeper protein-related transcriptional regulator