PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_19838_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

HD-ZIP

Protein Properties

Length: 413aa MW: 45527.6 Da PI: 5.1107

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_19838_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.7	3.2e-21	114	169	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k Neem_19838_f_1 114 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 169 688999***********************************************999 PP
2	START	36.1	1.6e-12	323	400	1	69
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCG CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddk 69 ela++a++elvk+a+ +ep+W +s e +n++e++++f++ + + +ea+r+sg+v+ ++ lve+l+d + Neem_19838_f_1 323 ELALAAMDELVKMAQTDEPLWIRSLeggrEVLNREEYMRTFTPCIGmkptgFVTEASRESGMVIINSLALVETLMDPM 400 5899************************************99989**************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.28E-21	97	171	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.3E-22	100	171	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.216	111	171	IPR001356	Homeobox domain
SMART	SM00389	1.7E-17	112	175	IPR001356	Homeobox domain
CDD	cd00086	6.95E-19	113	171	No hit	No description
Pfam	PF00046	8.7E-19	114	169	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	146	169	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	12.817	314	398	IPR002913	START domain
Pfam	PF01852	4.3E-8	323	400	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MSFGGFLDNS SGGGGARIVA DISYSNNMPT TTLAQPRLVT PSLTKSMFNS PGLSLALQQP 60 NIDNQGDMPR MGENFESVAG RRSREEEHES RSGSENMDGA SGDDQDAADN PPRKKRYHRH 120 TPQQIQELEA LFKECPHPDE KQRLELSRRL CLETRQVKFW FQNRRTQMKT QLERHENSLL 180 RQENDKLRAE NMSIRDAMRN PICTNCGGPA IIGDISLEEQ HLRIENARLK DELDRVCALA 240 GKFLGRPISS LATSMAPPMP NSSLELGVGS NGFGGLSPVT TTLPLGPDFG GGISNPLPVM 300 PPNRSTAGVT GLDRSIERSM FLELALAAMD ELVKMAQTDE PLWIRSLEGG REVLNREEYM 360 RTFTPCIGMK PTGFVTEASR ESGMVIINSL ALVETLMDPM GLVLCSFVCL DDS

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MSFGGFLDNS SGGGGARIVA DISYSNNMPT TTLAQPRLVT PSLTKSMFNS PGLSLALQQP  60
NIDNQGDMPR MGENFESVAG RRSREEEHES RSGSENMDGA SGDDQDAADN PPRKKRYHRH  120
TPQQIQELEA LFKECPHPDE KQRLELSRRL CLETRQVKFW FQNRRTQMKT QLERHENSLL  180
RQENDKLRAE NMSIRDAMRN PICTNCGGPA IIGDISLEEQ HLRIENARLK DELDRVCALA  240
GKFLGRPISS LATSMAPPMP NSSLELGVGS NGFGGLSPVT TTLPLGPDFG GGISNPLPVM  300
PPNRSTAGVT GLDRSIERSM FLELALAAMD ELVKMAQTDE PLWIRSLEGG REVLNREEYM  360
RTFTPCIGMK PTGFVTEASR ESGMVIINSL ALVETLMDPM GLVLCSFVCL DDS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM459307	5e-40	AM459307.2 Vitis vinifera contig VV78X101111.6, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007051912.2	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Refseq	XP_021279608.1	0.0	LOW QUALITY PROTEIN: homeobox-leucine zipper protein ANTHOCYANINLESS 2
Swissprot	Q0WV12	1e-164	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A061DTE3	0.0	A0A061DTE3_THECC; HD domain class transcription factor isoform 1
TrEMBL	A0A061DVH8	0.0	A0A061DVH8_THECC; HD domain class transcription factor isoform 3 (Fragment)
STRING	EOX96069	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM491	28	149

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.2	1e-141	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]