PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1986_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 408aa    MW: 45199.9 Da    PI: 5.9867
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1986_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.13.1e-110453971304
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lLl+cA++v+sg+le+a+ +L+++s+laspdgd+mqR+aayfteALa+r+++ +++l kal++++ +   +see+ ++klf+e++P+lk++++
  Neem_1986_f_2  45 LIHLLLSCANHVASGSLENANIALEQISQLASPDGDTMQRIAAYFTEALAQRILKAWPGLHKALNSTRIT--LVSEEMLVRKLFFEMFPFLKVAFV 138
                    689*************************************************************999987..69********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    ++NqaI ea+ege++vHiiD+ + +++QW+aLlqaL++Rpegpp+lRiTg++s    +ke l ++++ L++ Ae+l++pf+fn  +++rle+l++e
  Neem_1986_f_2 139 LTNQAIIEAMEGEKMVHIIDLHAAEPAQWIALLQALSTRPEGPPHLRITGIHS----QKEVLDRMAHILSEEAEKLDIPFQFNS-IVSRLENLDFE 229
                    *****************************************************....9**************************.79********* PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrll......................................................desvsles..erdevLklvk 232
                    +Lrvk+gEala+++vlqlh+ll                                                      ++++sl+   + d++L+ ++
  Neem_1986_f_2 230 KLRVKTGEALAISSVLQLHSLLaiddeilqkrsslglknaygvhlqrvlqmnqstlgellekdlangyspspdsasSSPLSLNAsgKMDSFLNSLW 325
                    **************************************************************************9955555554557888****** PP

           GRAS 233 slsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                    +lsPk++vv+eq+++hn+++++er+leal+ y+alfd+le++++r+s er kvE++l+g+ei+n++ac  ++
  Neem_1986_f_2 326 GLSPKIMVVTEQDSKHNGSTLMERLLEALYSYAALFDCLESTVSRTSLERLKVEKMLFGEEIKNIIACHLFH 397
                    ********************************************************************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.32919408IPR005202Transcription factor GRAS
PfamPF035141.1E-10745397IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MLQDDGSSSV TSSSPLQFFS MMSPSLGSPY PWLKELKSEE RGLYLIHLLL SCANHVASGS  60
LENANIALEQ ISQLASPDGD TMQRIAAYFT EALAQRILKA WPGLHKALNS TRITLVSEEM  120
LVRKLFFEMF PFLKVAFVLT NQAIIEAMEG EKMVHIIDLH AAEPAQWIAL LQALSTRPEG  180
PPHLRITGIH SQKEVLDRMA HILSEEAEKL DIPFQFNSIV SRLENLDFEK LRVKTGEALA  240
ISSVLQLHSL LAIDDEILQK RSSLGLKNAY GVHLQRVLQM NQSTLGELLE KDLANGYSPS  300
PDSASSSPLS LNASGKMDSF LNSLWGLSPK IMVVTEQDSK HNGSTLMERL LEALYSYAAL  360
FDCLESTVSR TSLERLKVEK MLFGEEIKNI IACHLFHSSH SPSHGTGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-40282411216Protein SCARECROW
5b3h_D2e-40282411216Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924242.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2N9J6M90.0A0A2N9J6M9_FAGSY; Uncharacterized protein
STRINGEOY328060.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]