PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_19871_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 240aa MW: 27651.4 Da PI: 8.7131

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_19871_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.9	3.8e-08	70	118	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +e+ErrRR ++ + Lr+llP + ++K s ++ +Av+YIk+L+ Neem_19871_f_1 70 RKEIERRRRLHMSMLHASLRSLLPLeS---IKGKRSVSDHTNEAVNYIKYLK 118 689********************66...******************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.852	65	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-9	65	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-8	67	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.9E-6	70	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MFPSGQNDDD FLFHYNPHQG DSIQQDLNRG QSLAERNSKN MGKGQRHKIL ATAKDDNENS 60 KNNYEKKNIR KEIERRRRLH MSMLHASLRS LLPLESIKGK RSVSDHTNEA VNYIKYLKKN 120 IEDSNVKRDQ LKKLINSEAL DQANRRSNNC LTNCVTVHPY LGGVEIVISS DHKEKHLPLS 180 KVLEALLEEG LDVVRCVSTQ TEERFFHTIQ TEVGDLTCVD LPGLQQKLNH MIMTMRYICL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	78	KKNIRKEIERRRRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024047265.1	8e-95	transcription factor bHLH118
TrEMBL	V4SDH3	3e-93	V4SDH3_9ROSI; Uncharacterized protein
STRING	XP_006490280.1	4e-94	(Citrus sinensis)
STRING	XP_006421796.1	6e-94	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17143	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25400.1	4e-35	bHLH family protein