PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_19871_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 294aa MW: 33188.4 Da PI: 5.7731

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_19871_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.4	8e-11	28	79	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + + +e+Er+RR+++ + + Lr+llP + ++K s e +Av+YIk+L+ Neem_19871_f_2 28 KIMRKEIERQRRQHMSNLHASLRSLLPLeS---IKGKRSTTEHINEAVNYIKQLE 79 66789*********************66...******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.427	26	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-13	26	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.07E-9	26	83	No hit	No description
Pfam	PF00010	4.1E-8	29	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.0E-11	30	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-4	32	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MGKGDRHKIL ADAQDNDGNS NTKNNEKKIM RKEIERQRRQ HMSNLHASLR SLLPLESIKG 60 KRSTTEHINE AVNYIKQLEK NIQELSLKRD QLKNISNLEA LDHGGSSSHN YLMKCVNINP 120 YSGGLEIVIS GIVGEENLQL SSVLEALLEE GLDVASFMSS RTDEGFFHTI QTELNHLHVC 180 FQDIPTQCEN FRWIMNSLGT DSGQSQKLHE CLNFYAIGTS TCRSGKQLLA YALLLQSVLL 240 GMPAVMYTGP DQESQSDRTK MSIGVEILDD EQDARCHRDY GTRELLLLDP LERE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024047265.1	3e-64	transcription factor bHLH118
TrEMBL	V4SDH3	1e-62	V4SDH3_9ROSI; Uncharacterized protein
STRING	XP_006490280.1	1e-63	(Citrus sinensis)
STRING	XP_006421796.1	2e-63	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17143	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	9e-33	bHLH family protein