PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_20173_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GeBP
Protein Properties Length: 237aa    MW: 26967.9 Da    PI: 10.947
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_20173_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57351.62.7e-1632125498
          DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddi....dafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                      r+++++Dei lL+ + + ++ t + +   +    +  ++ ++  +s+k+++ q+++K+rrL+ K++k+ +      +  ++++hd++ f+++k 
  Neem_20173_f_1  32 GRVFTDTDEIRLLKTFHKVNKATASLSITTTlpvdSPSFKRINTALSSKFTHAQITDKLRRLRIKYHKQARS-----KSLIRTPHDRELFKIAKN 121
                     59*****************9999884444331222467899**************************99998.....67899************* PP

          DUF573  95 iWgs 98 
                     iWg+
  Neem_20173_f_1 122 IWGK 125
                     **95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.4E-1633124IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSPKILTMST PNPRKRKQST PSSPSSTSSQ NGRVFTDTDE IRLLKTFHKV NKATASLSIT  60
TTLPVDSPSF KRINTALSSK FTHAQITDKL RRLRIKYHKQ ARSKSLIRTP HDRELFKIAK  120
NIWGKKTKAR GVENTASSRG QGRHDEQERE REKVDLEEYP VLVSEFSKFL PLNLVWKEAL  180
KSLGNDKLRE MNEKWMMIGI EEAKIVRKKA ELVKEQTNFV MQVLGDTATA TATSNGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11017PNPRKRKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424433.16e-89probable transcription factor At1g11510
TrEMBLA0A2H5MZL87e-88A0A2H5MZL8_CITUN; Uncharacterized protein
STRINGXP_006424433.12e-88(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17149810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.13e-11DNA-binding storekeeper protein-related transcriptional regulator