PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_20361_a_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

ARF

Protein Properties

Length: 163aa MW: 18377.4 Da PI: 11.0477

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_20361_a_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35	2.5e-11	3	46	54	99
EETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 54 kksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+++++r+ Neem_20361_a_2 3 RQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLLLGIRRA 46 67899***********************..8889999**996 PP
2	Auxin_resp	124	1e-40	71	154	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v+YnPras+seFv++++k++ka+ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k Neem_20361_a_2 71 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 154 79******************************87599****************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	10.052	1	47	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	8.5E-15	3	60	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	7.1E-9	3	46	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	6.8E-13	4	74	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF06507	9.3E-36	71	154	IPR010525	Auxin response factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MLRQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL LGIRRAIRPP TVMPSSVLSS 60 DSMHIGLLAA AAHAAATNSC FTVFYNPRAS PSEFVIPLSK YVKAVFHTRV SVGMRFRMLF 120 ETEESSVRRY MGTITGISDL DPVRWPNSHW RSVKVIDIVF TLD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	7e-68	4	155	217	368	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021592738.1	1e-101	auxin response factor 8-like isoform X2
Refseq	XP_021647232.1	1e-101	auxin response factor 8-like isoform X2
Swissprot	A2YG67	4e-88	ARFQ_ORYSI; Auxin response factor 17
Swissprot	Q653U3	4e-88	ARFQ_ORYSJ; Auxin response factor 17
TrEMBL	F6HFY5	1e-100	F6HFY5_VITVI; Auxin response factor
STRING	VIT_04s0079g00200.t01	1e-100	(Vitis vinifera)
STRING	cassava4.1_001923m	1e-100	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.1	3e-88	auxin response factor 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]