PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_20640_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 266aa    MW: 30316.7 Da    PI: 4.7739
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_20640_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.4e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G ++W+t+++  g+ R++k+c++rw +yl
   Neem_20640_f_2 14 RGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-21564IPR009057Homeodomain-like
PROSITE profilePS5129419.694965IPR017930Myb domain
SMARTSM007172.4E-61363IPR001005SANT/Myb domain
PfamPF002497.3E-121461IPR001005SANT/Myb domain
SuperFamilySSF466896.13E-201589IPR009057Homeodomain-like
CDDcd001678.25E-51661No hitNo description
Gene3DG3DSA:1.10.10.609.8E-86588IPR009057Homeodomain-like
SMARTSM007172566114IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRQPCCDKI GLKRGPWTIE EDHKLMNFIL NNGIHCWRTV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGAF TEVEEDQIIE LHARLGNRLK LLGLDPVTHK PIEQTEKTEQ VHDQKNKTSA  120
ESSSSQVQEI KSLEIKSNDH GDNVKKEIPA GTDDQKTQGD HHVELLTMDD TTAFLNNYEI  180
LCGNMEVGSW LNSQETNTST NNSCSTSSFS WEDQSSYNPS ISMGESPPNN FQEEDNSLQQ  240
WIDNVDSFLS WDCFNQLEDN LFLLGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-131288580B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023895144.14e-97myb-related protein 315
TrEMBLA0A4D6V2Y11e-104A0A4D6V2Y1_9ROSI; MYB transcription factor 32
STRINGGLYMA16G06900.12e-95(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.17e-65myb domain protein 40