PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_20823_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 745aa MW: 82331.9 Da PI: 5.867

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_20823_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.2	0.0007	658	695	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ + K s + Le++++++ Lq Neem_20823_f_1 658 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 695 77899************55......7777778999999988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.1E-35	7	168	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	0.00153	639	695	No hit	No description
PROSITE profile	PS50888	11.388	645	694	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.76E-5	650	699	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-4	658	700	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence Send to blast
MGTTADLHAI LKSLCFNTAW KYAVFWKLKH RARMVLTWED GYYDNCERHD SLEDKFSSEV 60 LETLHGGHYS HDPLGLEVAK MSYHVYSLGE GIVGQVAVTG KYQWIFSDQH VTNSCSSFEF 120 CDGWQSQFSA GIRTIAVVAA VPHGVVQLGS LNRVVEDIKL VTHIRDLFLA LNDFAVGDFS 180 SAIQCSMKNT LPLPDLPTKS LASEIIPNRW CNLGEVENKE GPDVQLPMLP FVENNNNGSY 240 VYPLSGIQPK TGVEVVNKHE GTQLSTEGSD GKAKLLKSES NAINLQHQNQ MGIHIISDGM 300 SKGETSGWKN LGVISEQNAA PFSINSVIDN INLCSVALQA EKFVVDHTYF PSNPLDSVLS 360 AKVKLECMDS YQNGIIPEIS NMKFQKDLEK LQNQTELDHL DPLDRSLKFS AGSELHEALG 420 PAFRKKSVYN DREPENTVDG ETVLMPEVMS SSHLTIDSAS ENLLEAVVAN VCHSGSDVKS 480 ESLKFSAGSE LHEALGPAFR KKSVYNDREP ENTVDGETVL MPEVMSSSHL TIDSASENLL 540 EAVVANVCHS GSDVKSERSF CKSVQSLLTT EKMPEPSSQS KNTINSVGYS ISQSSLVEED 600 TKQCLNSSEV CGTMSSKGFS SNCPTTCSEQ LDRSSEPTKN SKKRTRPGEN SRPRPRDRQL 660 IQDRIKELRE LVPNGSKCSI DSLLERTIKH MLFLQSITKH ADKLSKCAES KVKSSGIYFG 720 FLKLFLEIVN KTSFLVEERM KKGAF

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence Send to blast

MGTTADLHAI LKSLCFNTAW KYAVFWKLKH RARMVLTWED GYYDNCERHD SLEDKFSSEV  60
LETLHGGHYS HDPLGLEVAK MSYHVYSLGE GIVGQVAVTG KYQWIFSDQH VTNSCSSFEF  120
CDGWQSQFSA GIRTIAVVAA VPHGVVQLGS LNRVVEDIKL VTHIRDLFLA LNDFAVGDFS  180
SAIQCSMKNT LPLPDLPTKS LASEIIPNRW CNLGEVENKE GPDVQLPMLP FVENNNNGSY  240
VYPLSGIQPK TGVEVVNKHE GTQLSTEGSD GKAKLLKSES NAINLQHQNQ MGIHIISDGM  300
SKGETSGWKN LGVISEQNAA PFSINSVIDN INLCSVALQA EKFVVDHTYF PSNPLDSVLS  360
AKVKLECMDS YQNGIIPEIS NMKFQKDLEK LQNQTELDHL DPLDRSLKFS AGSELHEALG  420
PAFRKKSVYN DREPENTVDG ETVLMPEVMS SSHLTIDSAS ENLLEAVVAN VCHSGSDVKS  480
ESLKFSAGSE LHEALGPAFR KKSVYNDREP ENTVDGETVL MPEVMSSSHL TIDSASENLL  540
EAVVANVCHS GSDVKSERSF CKSVQSLLTT EKMPEPSSQS KNTINSVGYS ISQSSLVEED  600
TKQCLNSSEV CGTMSSKGFS SNCPTTCSEQ LDRSSEPTKN SKKRTRPGEN SRPRPRDRQL  660
IQDRIKELRE LVPNGSKCSI DSLLERTIKH MLFLQSITKH ADKLSKCAES KVKSSGIYFG  720
FLKLFLEIVN KTSFLVEERM KKGAF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM440351	3e-34	AM440351.2 Vitis vinifera contig VV78X153936.6, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024044170.1	0.0	transcription factor EMB1444 isoform X2
TrEMBL	A0A067FYE1	0.0	A0A067FYE1_CITSI; Uncharacterized protein
STRING	XP_006479559.1	0.0	(Citrus sinensis)
STRING	XP_006443866.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2083	20	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.3	2e-89	conserved peptide upstream open reading frame 7